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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9346-RA through 18771 annotations produced 1 hits



(CG9346):

Annotation Number : CG9346
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034572
Gbrowse : chr2R:16899476-16903133 (+) // 100.0 //
Probeset : 1639337_at
Accessions : protein= NP_611535;, nucleotide= NM_137691;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003676 // nucleic acid binding // inferred fro
FlyMine data for FBgn0034572.
BDGP gene expression has embryonic in situ data for CG9346: 19 pix of staining in 14 body parts.
VDRC has 1 RNAi stocks for FBgn0034572 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain181 64 of 4 2.10Up
Head84 54 of 4 1.00None
Eye79 54 of 4 0.93None
Thoracicoabdominal ganglion147 24 of 4 1.70Up
Salivary gland100 74 of 4 1.18None
Crop115 34 of 4 1.30Up
Midgut89 24 of 4 1.00None
Tubule77 34 of 4 0.90Down
Hindgut95 54 of 4 1.10None
Heart70 24 of 4 0.82Down
Fat body83 54 of 4 0.97None
Ovary149 24 of 4 1.70Up
Testis33 14 of 4 0.40Down
Male accessory glands117 74 of 4 1.40Up
Virgin spermatheca74 44 of 4 0.87None
Mated spermatheca73 24 of 4 0.86Down
Adult carcass70 44 of 4 0.80Down
Larval CNS207 184 of 4 2.42Up
Larval Salivary gland129 64 of 4 1.51Up
Larval midgut69 34 of 4 0.81Down
Larval tubule117 44 of 4 1.40Up
Larval hindgut84 24 of 4 0.99None
Larval fat body104 54 of 4 1.20Up
Larval trachea86 124 of 4 1.01None
Larval carcass88 64 of 4 1.03None
S2 cells (growing)130 84 of 4 1.53Up
Whole fly85 34 of 4

Looking for CG9346-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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