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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG9347-RA through 18771 annotations produced 1 hits


chr3R:9526307-9528844 (+) // 100.0 // (beta-carotene dioxygenase):

Annotation Number : CG9347
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1625743_at
Accessions : protein= , nucleotide= NP_650307;
Pathway : "0007602 // phototransduction // traceable author statement /// 0007603 // phototransduction
Interpro : visible light // inferred from mutant phenotype /// 0007604 // phototransduction
FlyMine data for full length.
Homophila reports that CG9347 is a close match (2e-82) to human gene RP20;RPE65 (NP_000320), a gene associated with Leber congenital amaurosis-2, 204100 (3);Retinitis pigmentosa-20 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain501 ± 124 of 416.60Up
Head621 ± 314 of 420.60Up
Eye1422 ± 1004 of 447.17Up
Thoracicoabdominal ganglion503 ± 84 of 416.70Up
Salivary gland7 ± 30 of 4 0.25Down
Crop9 ± 10 of 4 0.30Down
Midgut3 ± 10 of 4 0.10Down
Tubule4 ± 00 of 4 0.10Down
Hindgut9 ± 22 of 4 0.30Down
Heart3 ± 10 of 4 0.13Down
Fat body8 ± 10 of 4 0.29Down
Ovary3 ± 10 of 4 0.10Down
Testis3 ± 01 of 4 0.10Down
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca7 ± 21 of 4 0.26Down
Mated spermatheca9 ± 10 of 4 0.31Down
Adult carcass11 ± 41 of 4 0.40Down
Larval CNS7 ± 02 of 4 0.24Down
Larval Salivary gland3 ± 10 of 4 0.11Down
Larval midgut2 ± 00 of 4 0.07Down
Larval tubule2 ± 00 of 4 0.10Down
Larval hindgut5 ± 11 of 4 0.19Down
Larval fat body6 ± 30 of 4 0.20Down
Larval trachea17 ± 331 of 4 0.57None
Larval carcass7 ± 21 of 4 0.25Down
S2 cells (growing)3 ± 10 of 4 0.12Down
Whole fly30 ± 14 of 4

Looking for CG9347-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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