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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9353-RA through 18771 annotations produced 1 hits



mitochondrial ribosomal protein L54 (mRpL54):

Annotation Number : CG9353
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034579
Gbrowse : chr2R:16948328-16949092 (+) // 99.39 //
Probeset : 1624228_at
Accessions : protein= NP_611541;, nucleotide= NM_137697;
Pathway : 0005762 // mitochondrial large ribosomal subunit // inferred from sequence or structural similarity /// 0005840 // ribos
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity
FlyMine data for FBgn0034579.
VDRC has 2 RNAi stocks for FBgn0034579 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain136 ± 14 of 4 0.90None
Head84 ± 84 of 4 0.60Down
Eye81 ± 134 of 4 0.55Down
Thoracicoabdominal ganglion139 ± 84 of 4 1.00None
Salivary gland159 ± 44 of 4 1.08None
Crop100 ± 84 of 4 0.70Down
Midgut79 ± 64 of 4 0.50Down
Tubule85 ± 34 of 4 0.60Down
Hindgut167 ± 54 of 4 1.10Up
Heart93 ± 74 of 4 0.63Down
Fat body74 ± 114 of 4 0.51Down
Ovary263 ± 54 of 4 1.80Up
Testis28 ± 24 of 4 0.20Down
Male accessory glands125 ± 34 of 4 0.90Down
Virgin spermatheca58 ± 54 of 4 0.40Down
Mated spermatheca77 ± 34 of 4 0.53Down
Adult carcass92 ± 104 of 4 0.60Down
Larval CNS162 ± 104 of 4 1.10None
Larval Salivary gland112 ± 74 of 4 0.77Down
Larval midgut57 ± 34 of 4 0.39Down
Larval tubule57 ± 44 of 4 0.40Down
Larval hindgut136 ± 164 of 4 0.93None
Larval fat body45 ± 54 of 4 0.30Down
Larval trachea86 ± 174 of 4 0.59Down
Larval carcass92 ± 124 of 4 0.63Down
S2 cells (growing)102 ± 44 of 4 0.70Down
Whole fly146 ± 34 of 4

Looking for CG9353-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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