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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9358-RA through 18771 annotations produced 1 hits



Pherokine 3 (Phk-3):

Annotation Number : CG9358
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035089
Gbrowse : chr2R:20858365-20859365 (-) // 100.0 //
Probeset : 1632591_at
Accessions : protein= NP_611990;, nucleotide= NM_138146;
Pathway : embryo // traceable author statement /// 0009617 // response to bacterium // inferred from expression pattern /// 00307
Interpro : 0005737 // cytoplasm // traceable author statement /// 0019897 // extrinsic to plasma membrane // traceable author state
FlyMine data for FBgn0035089.
BDGP gene expression has embryonic in situ data for CG9358: 22 pix of staining in 10 body parts.
TRiP has 1 RNAi stocks for FBgn0035089 available for purchase.
VDRC has 4 RNAi stocks for FBgn0035089 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 12 of 4 0.10Down
Head196 94 of 4 1.60Up
Eye141 74 of 4 1.15None
Thoracicoabdominal ganglion6 10 of 4 0.10Down
Salivary gland16 50 of 4 0.13Down
Crop690 494 of 4 5.60Up
Midgut74 144 of 4 0.60None
Tubule75 433 of 4 0.60None
Hindgut1461 464 of 411.90Up
Heart54 74 of 4 0.45Down
Fat body57 64 of 4 0.47None
Ovary7 14 of 4 0.10Down
Testis19 04 of 4 0.20Down
Male accessory glands15 22 of 4 0.10Down
Virgin spermatheca93 54 of 4 0.76None
Mated spermatheca96 124 of 4 0.78None
Adult carcass111 24 of 4 0.90None
Larval CNS24 124 of 4 0.20Down
Larval Salivary gland167 124 of 4 1.36None
Larval midgut191 164 of 4 1.55None
Larval tubule48 164 of 4 0.40Down
Larval hindgut1950 1004 of 415.83Up
Larval fat body165 144 of 4 1.30None
Larval trachea4231 1824 of 434.35Up
Larval carcass2258 2394 of 418.33Up
S2 cells (growing)203 144 of 4 1.65Up
Whole fly123 224 of 4

Looking for CG9358-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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