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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG9359-RA through 18771 annotations produced 1 hits


beta-tubulin (betaTub85D):

Annotation Number : CG9359
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003889
Gbrowse : chr3R:5234074-5236004 (-) // 100.0 //
Probeset : 1624746_at
Accessions : protein= NP_524290;, nucleotide= NM_079566;
Pathway : 0005874 // microtubule // inferred from electronic annotation /// 0005874 // microtubule // inferred from sequence or st
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0003924 // GTPase activity // inferred from ele
FlyMine data for FBgn0003889.
BDGP gene expression has embryonic in situ data for betaTub85D: 14 pix of staining in 8 body parts.
Homophila reports that CG9359 is a close match (5e-96) to human gene LIS3;TUBA1A;TUBA3 (NP_006000), a gene associated with Lissencephaly 3, 611603 (3).
BioGrid reports that CG9359 interacts with CG8019 CG1913 CG1913 CG8019 CG8019 .
VDRC has 2 RNAi stocks for FBgn0003889 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain19 ± 12 of 4 0.00Down
Head8 ± 21 of 4 0.00Down
Eye6 ± 11 of 4 0.01Down
Thoracicoabdominal ganglion26 ± 14 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.01Down
Crop3 ± 10 of 4 0.00Down
Midgut4 ± 20 of 4 0.00Down
Tubule6 ± 10 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.00Down
Fat body4 ± 30 of 4 0.01Down
Ovary3 ± 00 of 4 0.00Down
Testis3184 ± 1704 of 4 5.60Up
Male accessory glands3 ± 10 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.00Down
Mated spermatheca4 ± 10 of 4 0.01Down
Adult carcass26 ± 82 of 4 0.00Down
Larval CNS22 ± 54 of 4 0.04Down
Larval Salivary gland3 ± 00 of 4 0.01Down
Larval midgut12 ± 20 of 4 0.02Down
Larval tubule4 ± 20 of 4 0.00Down
Larval hindgut4 ± 00 of 4 0.01Down
Larval fat body789 ± 4194 of 4 1.40None
Larval trachea12 ± 211 of 4 0.02Down
Larval carcass8 ± 11 of 4 0.01Down
S2 cells (growing)3 ± 00 of 4 0.01Down
Whole fly566 ± 94 of 4

Looking for CG9359-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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