Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9362-RA through 18771 annotations produced 1 hits



(CG9362):

Annotation Number : CG9362
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037696
Gbrowse : chr3R:5281233-5282264 (-) // 100.0 //
Probeset : 1624580_at
Accessions : protein= NP_649894;, nucleotide= NM_141637;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or struct
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004364 // glutathione transferase activity //
FlyMine data for FBgn0037696.
VDRC has 3 RNAi stocks for FBgn0037696 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 14 of 4 0.30Down
Head86 ± 54 of 4 1.10None
Eye111 ± 124 of 4 1.41None
Thoracicoabdominal ganglion29 ± 24 of 4 0.40Down
Salivary gland177 ± 94 of 4 2.23Up
Crop83 ± 34 of 4 1.00None
Midgut72 ± 44 of 4 0.90None
Tubule138 ± 54 of 4 1.70Up
Hindgut193 ± 104 of 4 2.40Up
Heart82 ± 14 of 4 1.04None
Fat body135 ± 124 of 4 1.70Up
Ovary102 ± 34 of 4 1.30None
Testis10 ± 01 of 4 0.10Down
Male accessory glands129 ± 104 of 4 1.60Up
Virgin spermatheca163 ± 74 of 4 2.06Up
Mated spermatheca163 ± 74 of 4 2.06Up
Adult carcass102 ± 24 of 4 1.30None
Larval CNS22 ± 34 of 4 0.28Down
Larval Salivary gland160 ± 164 of 4 2.02Up
Larval midgut82 ± 34 of 4 1.04None
Larval tubule154 ± 54 of 4 1.90Up
Larval hindgut230 ± 94 of 4 2.90Up
Larval fat body158 ± 174 of 4 2.00Up
Larval trachea116 ± 174 of 4 1.46Up
Larval carcass111 ± 104 of 4 1.40None
S2 cells (growing)60 ± 54 of 4 0.77None
Whole fly79 ± 84 of 4

Looking for CG9362-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime