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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9363-RB through 18771 annotations produced 1 hits



(CG9363):

Annotation Number : CG9363
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037697
Gbrowse : chr3R:5283368-5286362 (-) // 100.0 //
Probeset : 1637752_a_at
Accessions : protein= NP_649895; /// NP_731358; /// NP_996190;, nucleotide= NM_141638; /// NM_169286; /// NM_206468;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005737 // cytoplasm // inferred from sequence or struct
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004364 // glutathione transferase activity //
FlyMine data for FBgn0037697.
BDGP gene expression has embryonic in situ data for CG9363: 8 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0037697 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 14 of 4 1.80None
Head78 154 of 4 4.90Up
Eye65 54 of 4 4.14Up
Thoracicoabdominal ganglion27 34 of 4 1.70Up
Salivary gland11 60 of 4 0.73None
Crop7 11 of 4 0.50None
Midgut3 10 of 4 0.20Down
Tubule12 02 of 4 0.80Down
Hindgut3 10 of 4 0.20Down
Heart3 10 of 4 0.19Down
Fat body7 41 of 4 0.47None
Ovary3 00 of 4 0.20Down
Testis1 00 of 4 0.10Down
Male accessory glands3 10 of 4 0.20Down
Virgin spermatheca1 00 of 4 0.09Down
Mated spermatheca5 00 of 4 0.35Down
Adult carcass78 34 of 4 4.90Up
Larval CNS335 154 of 421.04Up
Larval Salivary gland4 20 of 4 0.27Down
Larval midgut6 20 of 4 0.43None
Larval tubule9 00 of 4 0.60None
Larval hindgut3 10 of 4 0.20Down
Larval fat body5 10 of 4 0.30Down
Larval trachea7 00 of 4 0.48None
Larval carcass127 124 of 4 7.99Up
S2 cells (growing)2 10 of 4 0.17Down
Whole fly15 34 of 4

Looking for CG9363-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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