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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9374-RA through 18771 annotations produced 1 hits



lkb1 (lkb1):

Annotation Number : CG9374
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038167
Gbrowse : chr3R:9502270-9505157 (+) // 100.0 //
Probeset : 1635781_s_at
Accessions : protein= NP_001163606; /// NP_650302; /// NP_731840; /// NP_731841; /// NP_731842; /// NP_731843; /// NP_731844; /// NP_731845; /// NP_731846;, nucleotide= NM_001170135; /// NM_142045; /// NM_169541; /// NM_169542; /// NM_169543; /// NM_169544; /// NM_169545; /// NM_169546; /// NM_169547;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005737 // c
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0004672 // protein kinase activity // non-trace
FlyMine data for FBgn0038167.
BDGP gene expression has embryonic in situ data for CG9374: 4 pix of staining in 1 body parts.
Homophila reports that CG9374 is a close match (9e-11) to human gene IGF1R (NP_000866), a gene associated with Intrauterine and postnatal growth retardation (3).
TRiP has 2 RNAi stocks for FBgn0038167 available for purchase.
VDRC has 1 RNAi stocks for FBgn0038167 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 ± 24 of 4 1.10None
Head25 ± 24 of 4 0.50Down
Eye27 ± 44 of 4 0.60Down
Thoracicoabdominal ganglion46 ± 14 of 4 1.00None
Salivary gland52 ± 24 of 4 1.12None
Crop31 ± 14 of 4 0.70Down
Midgut26 ± 34 of 4 0.60Down
Tubule27 ± 14 of 4 0.60Down
Hindgut57 ± 14 of 4 1.20Up
Heart21 ± 14 of 4 0.47Down
Fat body18 ± 33 of 4 0.40Down
Ovary62 ± 14 of 4 1.30Up
Testis180 ± 14 of 4 3.90Up
Male accessory glands33 ± 44 of 4 0.70None
Virgin spermatheca21 ± 14 of 4 0.47Down
Mated spermatheca25 ± 24 of 4 0.55Down
Adult carcass30 ± 22 of 4 0.60Down
Larval CNS36 ± 24 of 4 0.78None
Larval Salivary gland42 ± 54 of 4 0.91None
Larval midgut31 ± 24 of 4 0.68Down
Larval tubule21 ± 14 of 4 0.50Down
Larval hindgut54 ± 44 of 4 1.18None
Larval fat body30 ± 54 of 4 0.60None
Larval trachea26 ± 14 of 4 0.57Down
Larval carcass17 ± 24 of 4 0.37Down
S2 cells (growing)40 ± 14 of 4 0.87None
Whole fly46 ± 34 of 4

Looking for CG9374-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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