FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9388-RA through 18771 annotations produced 1 hits

AP-47 (AP-47):

Annotation Number : CG9388
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024833
Gbrowse : chr3R:5383436-5385245 (-) // 100.0 //
Probeset : 1623631_at
Accessions : protein= NP_649906;, nucleotide= NM_141649;
Pathway : 0008021 // synaptic vesicle // traceable author statement /// 0030131 // clathrin adaptor complex // inferred from elect
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0024833.
BDGP gene expression has embryonic in situ data for AP-47: 4 pix of staining in 1 body parts.
TRiP has 1 RNAi stocks for FBgn0024833 available for purchase.
VDRC has 1 RNAi stocks for FBgn0024833 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	340 ± 5	4 of 4	1.50	Up
Head	254 ± 7	4 of 4	1.10	Up
Eye	463 ± 7	4 of 4	2.04	Up
Thoracicoabdominal ganglion	239 ± 2	4 of 4	1.10	None
Salivary gland	568 ± 8	4 of 4	2.51	Up
Crop	272 ± 7	4 of 4	1.20	Up
Midgut	244 ± 3	4 of 4	1.10	Up
Tubule	441 ± 7	4 of 4	1.90	Up
Hindgut	336 ± 6	4 of 4	1.50	Up
Heart	105 ± 9	4 of 4	0.46	Down
Fat body	83 ± 5	4 of 4	0.37	Down
Ovary	330 ± 8	4 of 4	1.50	Up
Testis	108 ± 4	4 of 4	0.50	Down
Male accessory glands	303 ± 15	4 of 4	1.30	Up
Virgin spermatheca	130 ± 2	4 of 4	0.57	Down
Mated spermatheca	128 ± 6	4 of 4	0.57	Down
Adult carcass	130 ± 3	4 of 4	0.60	Down
Larval CNS	221 ± 6	4 of 4	0.98	None
Larval Salivary gland	499 ± 53	4 of 4	2.20	Up
Larval midgut	264 ± 14	4 of 4	1.17	None
Larval tubule	499 ± 9	4 of 4	2.20	Up
Larval hindgut	287 ± 7	4 of 4	1.27	Up
Larval fat body	163 ± 13	4 of 4	0.70	Down
Larval trachea	275 ± 14	4 of 4	1.21	Up
Larval carcass	189 ± 7	4 of 4	0.84	Down
S2 cells (growing)	293 ± 4	4 of 4	1.29	Up
Whole fly	227 ± 5	4 of 4

Looking for CG9388-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720