FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9401-RA through 18771 annotations produced 1 hits

Mago nashi (mago):

Annotation Number : CG9401
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0002736
Gbrowse : chr2R:17016083-17017245 (+) // 100.0 //
Probeset : 1636919_at
Accessions : protein= NP_476636;, nucleotide= NM_057288;
Pathway : via spliceosome // inferred by curator /// 0006397 // mRNA processing // inferred from electronic annotation /// 000640
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // non-traceable author statement /// 0005634 //
FlyMine data for FBgn0002736.
BDGP gene expression has embryonic in situ data for mago: 12 pix of staining in 14 body parts.
BioGrid reports that CG9401 interacts with CG4898 CG10901 CG8781 .
TRiP has 2 RNAi stocks for FBgn0002736 available for purchase.
VDRC has 1 RNAi stocks for FBgn0002736 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	193 ± 6	4 of 4	0.50	Down
Head	140 ± 16	4 of 4	0.40	Down
Eye	100 ± 13	4 of 4	0.27	Down
Thoracicoabdominal ganglion	166 ± 8	4 of 4	0.50	Down
Salivary gland	228 ± 12	4 of 4	0.62	Down
Crop	240 ± 11	4 of 4	0.70	Down
Midgut	164 ± 3	4 of 4	0.40	Down
Tubule	175 ± 6	4 of 4	0.50	Down
Hindgut	160 ± 5	4 of 4	0.40	Down
Heart	132 ± 13	4 of 4	0.36	Down
Fat body	323 ± 27	4 of 4	0.88	None
Ovary	760 ± 21	4 of 4	2.10	Up
Testis	80 ± 5	4 of 4	0.20	Down
Male accessory glands	194 ± 10	4 of 4	0.50	Down
Virgin spermatheca	616 ± 31	4 of 4	1.67	Up
Mated spermatheca	520 ± 8	4 of 4	1.41	Up
Adult carcass	150 ± 10	4 of 4	0.40	Down
Larval CNS	1114 ± 139	4 of 4	3.02	Up
Larval Salivary gland	635 ± 18	4 of 4	1.73	Up
Larval midgut	188 ± 6	4 of 4	0.51	Down
Larval tubule	263 ± 5	4 of 4	0.70	Down
Larval hindgut	278 ± 6	4 of 4	0.76	None
Larval fat body	258 ± 23	4 of 4	0.70	Down
Larval trachea	340 ± 35	4 of 4	0.92	None
Larval carcass	337 ± 32	4 of 4	0.92	None
S2 cells (growing)	646 ± 11	4 of 4	1.76	Up
Whole fly	368 ± 32	4 of 4

Looking for CG9401-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720