Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9415-RB through 18771 annotations produced 1 hits



X box binding protein-1 (Xbp1):

Annotation Number : CG9415
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0021872
Gbrowse : chr2R:17031049-17033255 (+) // 100.0 //
Probeset : 1635355_a_at
Accessions : protein= NP_726032;, nucleotide= NM_166427;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007040 // lysosome organization // inferred from mutant pheno
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0021872.
BDGP gene expression has embryonic in situ data for Xbp1: 26 pix of staining in 25 body parts.
BioGrid reports that CG9415 interacts with CG9738 CG9761 .
TRiP has 2 RNAi stocks for FBgn0021872 available for purchase.
VDRC has 2 RNAi stocks for FBgn0021872 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain769 ± 244 of 4 1.50Up
Head809 ± 54 of 4 1.60Up
Eye504 ± 284 of 4 1.02None
Thoracicoabdominal ganglion1019 ± 434 of 4 2.10Up
Salivary gland2952 ± 1204 of 4 5.94Up
Crop1786 ± 194 of 4 3.60Up
Midgut1022 ± 244 of 4 2.10Up
Tubule878 ± 384 of 4 1.80Up
Hindgut1421 ± 364 of 4 2.90Up
Heart1006 ± 114 of 4 2.03Up
Fat body1464 ± 494 of 4 2.95Up
Ovary274 ± 14 of 4 0.60Down
Testis166 ± 74 of 4 0.30Down
Male accessory glands2040 ± 1224 of 4 4.10Up
Virgin spermatheca2100 ± 1044 of 4 4.23Up
Mated spermatheca1937 ± 964 of 4 3.90Up
Adult carcass1240 ± 794 of 4 2.50Up
Larval CNS643 ± 394 of 4 1.29Up
Larval Salivary gland2343 ± 734 of 4 4.72Up
Larval midgut1181 ± 724 of 4 2.38Up
Larval tubule968 ± 54 of 4 1.90Up
Larval hindgut1170 ± 304 of 4 2.35Up
Larval fat body1301 ± 1264 of 4 2.60Up
Larval trachea401 ± 784 of 4 0.81None
Larval carcass1176 ± 484 of 4 2.37Up
S2 cells (growing)2079 ± 144 of 4 4.18Up
Whole fly497 ± 174 of 4

Looking for CG9415-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime