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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9418-RA through 18771 annotations produced 1 hits



(CG9418):

Annotation Number : CG9418
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026582
Gbrowse : chr2R:17033712-17035134 (+) // 100.0 //
Probeset : 1638938_at
Accessions : protein= NP_611553;, nucleotide= NM_137709;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0003677 // DNA binding // inferred from sequence or structural similarity /// 0003677 // DNA binding // inferred from el
FlyMine data for FBgn0026582.
BDGP gene expression has embryonic in situ data for BEST:LD07122: 4 pix of staining in 1 body parts.
TRiP has 3 RNAi stocks for FBgn0026582 available for purchase.
VDRC has 2 RNAi stocks for FBgn0026582 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain102 14 of 4 1.50Up
Head45 34 of 4 0.70Down
Eye64 44 of 4 0.93None
Thoracicoabdominal ganglion106 54 of 4 1.50Up
Salivary gland49 42 of 4 0.71Down
Crop97 54 of 4 1.40Up
Midgut34 14 of 4 0.50Down
Tubule50 14 of 4 0.70Down
Hindgut66 44 of 4 1.00None
Heart46 54 of 4 0.67Down
Fat body30 24 of 4 0.44Down
Ovary148 54 of 4 2.10Up
Testis29 14 of 4 0.40Down
Male accessory glands52 14 of 4 0.80Down
Virgin spermatheca38 14 of 4 0.55Down
Mated spermatheca41 24 of 4 0.60Down
Adult carcass30 33 of 4 0.40Down
Larval CNS91 54 of 4 1.32Up
Larval Salivary gland46 54 of 4 0.67Down
Larval midgut28 14 of 4 0.41Down
Larval tubule70 14 of 4 1.00None
Larval hindgut65 34 of 4 0.94None
Larval fat body35 74 of 4 0.50Down
Larval trachea65 54 of 4 0.95None
Larval carcass45 34 of 4 0.65Down
S2 cells (growing)195 34 of 4 2.81Up
Whole fly69 44 of 4

Looking for CG9418-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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