Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9423-RA through 18771 annotations produced 1 hits



Importin alpha-3 (Kap-alpha3):

Annotation Number : CG9423
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027338
Gbrowse : chr3R:5400205-5403506 (-) // 100.0 //
Probeset : 1635566_s_at
Accessions : protein= NP_001163572; /// NP_731377; /// NP_731378; /// NP_788614;, nucleotide= NM_001170101; /// NM_169295; /// NM_169296; /// NM_176437;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005643 // nuclear pore // inferred from sequence or struc
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0027338.
BDGP gene expression has embryonic in situ data for Kap-alpha3: 16 pix of staining in 5 body parts.
BioGrid reports that CG9423 interacts with CG4799 .
TRiP has 1 RNAi stocks for FBgn0027338 available for purchase.
VDRC has 3 RNAi stocks for FBgn0027338 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain51 14 of 4 1.40Up
Head28 24 of 4 0.80Down
Eye18 23 of 4 0.49Down
Thoracicoabdominal ganglion55 24 of 4 1.50Up
Salivary gland38 33 of 4 1.03None
Crop46 24 of 4 1.20Up
Midgut17 11 of 4 0.50Down
Tubule24 13 of 4 0.60Down
Hindgut24 04 of 4 0.60Down
Heart16 14 of 4 0.43Down
Fat body33 44 of 4 0.90None
Ovary82 34 of 4 2.20Up
Testis20 34 of 4 0.50Down
Male accessory glands15 10 of 4 0.40Down
Virgin spermatheca43 44 of 4 1.16None
Mated spermatheca41 24 of 4 1.09None
Adult carcass29 04 of 4 0.80Down
Larval CNS87 104 of 4 2.33Up
Larval Salivary gland51 24 of 4 1.35Up
Larval midgut14 02 of 4 0.39Down
Larval tubule42 54 of 4 1.10None
Larval hindgut44 24 of 4 1.17None
Larval fat body43 104 of 4 1.10None
Larval trachea23 54 of 4 0.62Down
Larval carcass37 24 of 4 1.00None
S2 cells (growing)34 14 of 4 0.91None
Whole fly37 14 of 4

Looking for CG9423-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime