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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9430-RA through 18771 annotations produced 1 hits



(CG9430):

Annotation Number : CG9430
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033097
Gbrowse : chr2R:2606120-2607038 (-) // 100.0 //
Probeset : 1638506_at
Accessions : protein= NP_610231;, nucleotide= NM_136387;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation
FlyMine data for FBgn0033097.
VDRC has 3 RNAi stocks for FBgn0033097 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 02 of 4 1.40None
Head8 11 of 4 1.50None
Eye12 13 of 4 2.19Up
Thoracicoabdominal ganglion6 12 of 4 1.20None
Salivary gland11 41 of 4 2.03None
Crop9 11 of 4 1.70None
Midgut65 34 of 411.60Up
Tubule10 01 of 4 1.80Up
Hindgut10 22 of 4 1.90None
Heart8 11 of 4 1.58None
Fat body12 13 of 4 2.26Up
Ovary4 00 of 4 0.80None
Testis5 11 of 4 1.00None
Male accessory glands17 31 of 4 3.10Up
Virgin spermatheca10 03 of 4 1.90None
Mated spermatheca9 12 of 4 1.70None
Adult carcass10 00 of 4 1.80None
Larval CNS4 10 of 4 0.84None
Larval Salivary gland9 12 of 4 1.68None
Larval midgut12 22 of 4 2.20Up
Larval tubule12 02 of 4 2.10Up
Larval hindgut8 04 of 4 1.41None
Larval fat body8 10 of 4 1.60None
Larval trachea8 23 of 4 1.51None
Larval carcass8 12 of 4 1.46None
S2 cells (growing)5 00 of 4 0.99None
Whole fly5 12 of 4

Looking for CG9430-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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