FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9432-RA through 18771 annotations produced 1 hits

Fusion2 (l(2)01289):

Annotation Number : CG9432
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010482
Gbrowse : chr2R:2614333-2627837 (-) // 100.0 //
Probeset : 1630402_at
Accessions : protein= NP_001036474; /// NP_001036475; /// NP_001163064; /// NP_001163065; /// NP_001163066; /// NP_652026; /// NP_724492;, nucleotide= NM_001043009; /// NM_001043010; /// NM_001169593; /// NM_001169594; /// NM_001169595; /// NM_143769; /// NM_165485;
Pathway : 0005886 // plasma membrane // inferred from sequence or structural similarity
Interpro : 0003756 // protein disulfide isomerase activity // inferred from sequence or structural similarity /// 0003756 // protei
FlyMine data for FBgn0010482.
VDRC has 3 RNAi stocks for FBgn0010482 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	8 ± 1	4 of 4	0.10	Down
Head	53 ± 2	4 of 4	0.40	Down
Eye	6 ± 0	4 of 4	0.06	Down
Thoracicoabdominal ganglion	9 ± 2	4 of 4	0.10	Down
Salivary gland	6 ± 2	0 of 4	0.05	Down
Crop	868 ± 24	4 of 4	7.10	Up
Midgut	78 ± 1	4 of 4	0.60	Down
Tubule	7 ± 0	2 of 4	0.10	Down
Hindgut	383 ± 5	4 of 4	3.10	Up
Heart	261 ± 40	4 of 4	2.12	Up
Fat body	24 ± 3	4 of 4	0.20	Down
Ovary	7 ± 1	4 of 4	0.10	Down
Testis	8 ± 1	4 of 4	0.10	Down
Male accessory glands	49 ± 1	4 of 4	0.40	Down
Virgin spermatheca	39 ± 2	4 of 4	0.32	Down
Mated spermatheca	59 ± 6	4 of 4	0.49	Down
Adult carcass	436 ± 19	4 of 4	3.50	Up
Larval CNS	12 ± 1	4 of 4	0.10	Down
Larval Salivary gland	10 ± 2	1 of 4	0.08	Down
Larval midgut	58 ± 3	4 of 4	0.48	Down
Larval tubule	7 ± 1	3 of 4	0.10	Down
Larval hindgut	499 ± 14	4 of 4	4.05	Up
Larval fat body	121 ± 11	4 of 4	1.00	None
Larval trachea	52 ± 27	4 of 4	0.42	Down
Larval carcass	2185 ± 227	4 of 4	17.75	Up
S2 cells (growing)	2 ± 0	0 of 4	0.02	Down
Whole fly	123 ± 6	4 of 4

Looking for CG9432-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720