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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9437-RA through 18771 annotations produced 1 hits



(CG9437):

Annotation Number : CG9437
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034599
Gbrowse : chr2R:17056464-17057518 (+) // 100.0 //
Probeset : 1624214_at
Accessions : protein= NP_611558;, nucleotide= NM_137714;
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0034599.
BDGP gene expression has embryonic in situ data for CG9437: 4 pix of staining in 1 body parts.
BioGrid reports that CG9437 interacts with CG9437 .
TRiP has 1 RNAi stocks for FBgn0034599 available for purchase.
VDRC has 1 RNAi stocks for FBgn0034599 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain74 ± 14 of 4 0.80None
Head48 ± 34 of 4 0.50Down
Eye59 ± 24 of 4 0.68Down
Thoracicoabdominal ganglion58 ± 34 of 4 0.70Down
Salivary gland73 ± 64 of 4 0.84None
Crop68 ± 44 of 4 0.80Down
Midgut48 ± 14 of 4 0.60Down
Tubule35 ± 04 of 4 0.40Down
Hindgut57 ± 24 of 4 0.70Down
Heart43 ± 44 of 4 0.50Down
Fat body41 ± 54 of 4 0.48Down
Ovary123 ± 24 of 4 1.40Up
Testis168 ± 54 of 4 1.90Up
Male accessory glands88 ± 64 of 4 1.00None
Virgin spermatheca33 ± 14 of 4 0.38Down
Mated spermatheca29 ± 14 of 4 0.33Down
Adult carcass47 ± 54 of 4 0.50Down
Larval CNS88 ± 04 of 4 1.01None
Larval Salivary gland76 ± 44 of 4 0.88None
Larval midgut30 ± 23 of 4 0.35Down
Larval tubule38 ± 04 of 4 0.40Down
Larval hindgut32 ± 24 of 4 0.37Down
Larval fat body48 ± 114 of 4 0.50Down
Larval trachea63 ± 104 of 4 0.73Down
Larval carcass41 ± 14 of 4 0.47Down
S2 cells (growing)84 ± 14 of 4 0.97None
Whole fly87 ± 44 of 4

Looking for CG9437-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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