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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9454-RA through 18771 annotations produced 1 hits



Serpin 42Db (Spn42Db):

Annotation Number : CG9454
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033112
Gbrowse : chr2R:2767106-2768220 (-) // 100.0 //
Probeset : 1640168_at
Accessions : protein= NP_610244;, nucleotide= NM_136400;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from sequence or structural similarity /// 0004867 /
FlyMine data for FBgn0033112.
Homophila reports that CG9454 is a close match (1e-11) to human gene C1NH;HAE1;HAE2;SERPING1 (NP_001027466), a gene associated with Angioedema, hereditary, 106100 (3).
TRiP has 1 RNAi stocks for FBgn0033112 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033112 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.50None
Head6 ± 10 of 4 0.90None
Eye2 ± 00 of 4 0.33Down
Thoracicoabdominal ganglion5 ± 10 of 4 0.80None
Salivary gland14 ± 41 of 4 1.99None
Crop7 ± 21 of 4 1.00None
Midgut6 ± 10 of 4 0.90None
Tubule6 ± 00 of 4 0.90None
Hindgut5 ± 11 of 4 0.70None
Heart4 ± 01 of 4 0.66Down
Fat body13 ± 34 of 4 1.93Up
Ovary0 ± 00 of 4 0.10Down
Testis52 ± 24 of 4 7.30Up
Male accessory glands8 ± 30 of 4 1.10None
Virgin spermatheca12 ± 14 of 4 1.69Up
Mated spermatheca11 ± 43 of 4 1.63None
Adult carcass8 ± 10 of 4 1.20None
Larval CNS5 ± 21 of 4 0.78None
Larval Salivary gland10 ± 11 of 4 1.42None
Larval midgut3 ± 10 of 4 0.53None
Larval tubule24 ± 24 of 4 3.40Up
Larval hindgut4 ± 10 of 4 0.56None
Larval fat body111 ± 94 of 415.50Up
Larval trachea6 ± 42 of 4 0.89None
Larval carcass6 ± 12 of 4 0.88None
S2 cells (growing)15 ± 04 of 4 2.13Up
Whole fly7 ± 03 of 4

Looking for CG9454-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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