FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9455-RA through 18771 annotations produced 1 hits

Serpin 42Dc (Spn42Dc):

Annotation Number : CG9455
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033113
Gbrowse : chr2R:2769220-2770916 (+) // 100.0 //
Probeset : 1634958_at
Accessions : protein= NP_610245;, nucleotide= NM_136401;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from sequence or structural similarity /// 0004867 /
FlyMine data for FBgn0033113.
Homophila reports that CG9455 is a close match (2e-20) to human gene PLI;SERPINF2 (NP_000925), a gene associated with Plasmin inhibitor deficiency (3).
BioGrid reports that CG9455 interacts with CG9709 .
TRiP has 1 RNAi stocks for FBgn0033113 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033113 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	4 ± 0	2 of 4	0.10	Down
Head	15 ± 2	3 of 4	0.50	Down
Eye	8 ± 1	1 of 4	0.26	Down
Thoracicoabdominal ganglion	5 ± 0	1 of 4	0.20	Down
Salivary gland	9 ± 1	0 of 4	0.27	Down
Crop	48 ± 2	4 of 4	1.40	Up
Midgut	116 ± 3	4 of 4	3.40	Up
Tubule	263 ± 22	4 of 4	7.70	Up
Hindgut	44 ± 2	4 of 4	1.30	Up
Heart	11 ± 0	2 of 4	0.33	Down
Fat body	14 ± 4	2 of 4	0.41	Down
Ovary	4 ± 1	0 of 4	0.10	Down
Testis	214 ± 14	4 of 4	6.20	Up
Male accessory glands	27 ± 2	0 of 4	0.80	None
Virgin spermatheca	58 ± 4	4 of 4	1.70	Up
Mated spermatheca	46 ± 4	4 of 4	1.37	None
Adult carcass	12 ± 3	1 of 4	0.40	Down
Larval CNS	7 ± 3	4 of 4	0.23	Down
Larval Salivary gland	24 ± 3	4 of 4	0.72	None
Larval midgut	212 ± 14	4 of 4	6.20	Up
Larval tubule	410 ± 11	4 of 4	12.00	Up
Larval hindgut	114 ± 6	4 of 4	3.35	Up
Larval fat body	379 ± 19	4 of 4	11.10	Up
Larval trachea	39 ± 7	4 of 4	1.15	None
Larval carcass	50 ± 1	4 of 4	1.46	Up
S2 cells (growing)	272 ± 6	4 of 4	7.95	Up
Whole fly	34 ± 0	4 of 4

Looking for CG9455-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720