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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9458-RA through 18771 annotations produced 1 hits



(CG9458):

Annotation Number : CG9458
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037765
Gbrowse : chr3R:5644730-5645589 (-) // 100.0 //
Probeset : 1637754_at
Accessions : protein= NP_731419;, nucleotide= NM_169312;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037765.
Homophila reports that CG9458 is a close match (2e-30) to human gene ADMD;ELOVL4;STGD2;STGD3 (NP_073563), a gene associated with Macular dystrophy, autosomal dominant, chromosome 6-linked, 600110 (3);Stargardt disease 3, 600110 (3).
VDRC has 1 RNAi stocks for FBgn0037765 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.00Down
Head4 ± 10 of 4 0.00Down
Eye4 ± 20 of 4 0.01Down
Thoracicoabdominal ganglion17 ± 131 of 4 0.00Down
Salivary gland18 ± 20 of 4 0.05Down
Crop11 ± 20 of 4 0.00Down
Midgut3 ± 00 of 4 0.00Down
Tubule26 ± 71 of 4 0.10Down
Hindgut13 ± 30 of 4 0.00Down
Heart3527 ± 2154 of 4 9.32Up
Fat body3143 ± 3404 of 4 8.31Up
Ovary6 ± 10 of 4 0.00Down
Testis5 ± 10 of 4 0.00Down
Male accessory glands4 ± 10 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.01Down
Mated spermatheca7 ± 20 of 4 0.02Down
Adult carcass2590 ± 324 of 4 6.80Up
Larval CNS5 ± 10 of 4 0.02Down
Larval Salivary gland11 ± 20 of 4 0.03Down
Larval midgut3 ± 10 of 4 0.01Down
Larval tubule3 ± 20 of 4 0.00Down
Larval hindgut5 ± 00 of 4 0.01Down
Larval fat body9 ± 00 of 4 0.00Down
Larval trachea12 ± 141 of 4 0.03Down
Larval carcass342 ± 174 of 4 0.90None
S2 cells (growing)5 ± 10 of 4 0.02Down
Whole fly378 ± 324 of 4

Looking for CG9458-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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