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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9460-RA through 18771 annotations produced 1 hits



Serpin 42De (Spn42De):

Annotation Number : CG9460
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033115
Gbrowse : chr2R:2773909-2775771 (+) // 100.0 //
Probeset : 1626851_at
Accessions : protein= NP_610246;, nucleotide= NM_136402;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from sequence or structural similarity /// 0004867 /
FlyMine data for FBgn0033115.
BDGP gene expression has embryonic in situ data for CG9460: 13 pix of staining in 6 body parts.
Homophila reports that CG9460 is a close match (7e-12) to human gene C1NH;HAE1;HAE2;SERPING1 (NP_001027466), a gene associated with Angioedema, hereditary, 106100 (3).
TRiP has 1 RNAi stocks for FBgn0033115 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033115 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.30Down
Head7 ± 11 of 4 0.40Down
Eye3 ± 01 of 4 0.21Down
Thoracicoabdominal ganglion11 ± 21 of 4 0.60None
Salivary gland6 ± 40 of 4 0.33None
Crop9 ± 11 of 4 0.50Down
Midgut55 ± 34 of 4 3.10Up
Tubule24 ± 23 of 4 1.40Up
Hindgut18 ± 14 of 4 1.00None
Heart11 ± 14 of 4 0.65None
Fat body10 ± 20 of 4 0.60Down
Ovary3 ± 10 of 4 0.20Down
Testis6 ± 10 of 4 0.40Down
Male accessory glands1120 ± 364 of 462.10Up
Virgin spermatheca20 ± 40 of 4 1.15None
Mated spermatheca22 ± 11 of 4 1.26None
Adult carcass9 ± 40 of 4 0.50None
Larval CNS8 ± 11 of 4 0.47Down
Larval Salivary gland26 ± 23 of 4 1.46None
Larval midgut33 ± 23 of 4 1.84Up
Larval tubule139 ± 54 of 4 7.70Up
Larval hindgut106 ± 34 of 4 5.88Up
Larval fat body17 ± 10 of 4 1.00None
Larval trachea40 ± 74 of 4 2.23Up
Larval carcass63 ± 04 of 4 3.53Up
S2 cells (growing)33 ± 14 of 4 1.83Up
Whole fly18 ± 24 of 4

Looking for CG9460-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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