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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9463-RA through 18771 annotations produced 1 hits



(CG9463):

Annotation Number : CG9463
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032066
Gbrowse : chr2L:8765358-8768708 (-) // 100.0 //
Probeset : 1637357_at
Accessions : protein= NP_609250;, nucleotide= NM_135406;
Pathway : 0005764 // lysosome // inferred from sequence or structural similarity
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0032066.
BDGP gene expression has embryonic in situ data for CG9463: 8 pix of staining in 2 body parts.
Homophila reports that CG9463 is a close match (0) to human gene MAN2B1;MANB (NP_000519), a gene associated with Mannosidosis, alpha-, types I and II, 248500 (3).
VDRC has 2 RNAi stocks for FBgn0032066 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 0.00Down
Head2 10 of 4 0.00Down
Eye1 00 of 4 0.01Down
Thoracicoabdominal ganglion2 10 of 4 0.00Down
Salivary gland6 30 of 4 0.04Down
Crop4 00 of 4 0.00Down
Midgut2619 2324 of 416.20Up
Tubule4 00 of 4 0.00Down
Hindgut2 10 of 4 0.00Down
Heart1 00 of 4 0.01Down
Fat body5 10 of 4 0.04Down
Ovary1 00 of 4 0.00Down
Testis27 24 of 4 0.20Down
Male accessory glands3 10 of 4 0.00Down
Virgin spermatheca1 00 of 4 0.01Down
Mated spermatheca2 10 of 4 0.02Down
Adult carcass6 20 of 4 0.00Down
Larval CNS2 10 of 4 0.01Down
Larval Salivary gland2 10 of 4 0.02Down
Larval midgut1183 2824 of 4 7.33Up
Larval tubule4 10 of 4 0.00Down
Larval hindgut2 01 of 4 0.02Down
Larval fat body7 11 of 4 0.00Down
Larval trachea1 20 of 4 0.01Down
Larval carcass1 00 of 4 0.01Down
S2 cells (growing)42 24 of 4 0.27Down
Whole fly161 314 of 4

Looking for CG9463-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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