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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9465-RA through 18771 annotations produced 1 hits



(CG9465):

Annotation Number : CG9465
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032067
Gbrowse : chr2L:8769174-8772173 (-) // 100.0 //
Probeset : 1629179_at
Accessions : protein= NP_609251;, nucleotide= NM_135407;
Pathway : 0005764 // lysosome // inferred from sequence or structural similarity
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004553 // hydrolase activity
FlyMine data for FBgn0032067.
Homophila reports that CG9465 is a close match (0) to human gene MAN2B1;MANB (NP_000519), a gene associated with Mannosidosis, alpha-, types I and II, 248500 (3).
BioGrid reports that CG9465 interacts with CG9741 CG9745 .
VDRC has 2 RNAi stocks for FBgn0032067 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head2 ± 00 of 4 0.20Down
Eye2 ± 00 of 4 0.15Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.30Down
Salivary gland6 ± 20 of 4 0.41Down
Crop4 ± 10 of 4 0.30Down
Midgut308 ± 474 of 421.20Up
Tubule3 ± 00 of 4 0.20Down
Hindgut3 ± 10 of 4 0.20Down
Heart3 ± 10 of 4 0.23Down
Fat body2 ± 10 of 4 0.20Down
Ovary1 ± 00 of 4 0.10Down
Testis2 ± 00 of 4 0.20Down
Male accessory glands6 ± 20 of 4 0.40Down
Virgin spermatheca2 ± 00 of 4 0.18Down
Mated spermatheca5 ± 20 of 4 0.37Down
Adult carcass9 ± 20 of 4 0.70None
Larval CNS4 ± 10 of 4 0.29Down
Larval Salivary gland5 ± 10 of 4 0.37Down
Larval midgut54 ± 114 of 4 3.72Up
Larval tubule5 ± 10 of 4 0.40Down
Larval hindgut3 ± 10 of 4 0.27Down
Larval fat body7 ± 20 of 4 0.50Down
Larval trachea2 ± 20 of 4 0.20Down
Larval carcass1 ± 00 of 4 0.09Down
S2 cells (growing)5 ± 00 of 4 0.36Down
Whole fly14 ± 04 of 4

Looking for CG9465-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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