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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9467-RA through 18771 annotations produced 1 hits



(CG9467):

Annotation Number : CG9467
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037758
Gbrowse : chr3R:5623495-5626773 (-) // 100.0 //
Probeset : 1632306_at
Accessions : protein= NP_649952;, nucleotide= NM_141695;
Pathway : 0008076 // voltage-gated potassium channel complex // inferred from electronic annotation /// 0016020 // membrane // inf
Interpro : 0004365 // glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) activity // inferred from electronic annotation //
FlyMine data for FBgn0037758.
BDGP gene expression has embryonic in situ data for CG9467: 13 pix of staining in 7 body parts.
Homophila reports that CG9467 is a close match (5e-13) to human gene EPM3;KCTD7 (NP_694578), a gene associated with Epilepsy, progressive myoclonic 3, 611726 (3).
TRiP has 1 RNAi stocks for FBgn0037758 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037758 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1094 254 of 4 4.00Up
Head543 124 of 4 2.00Up
Eye254 164 of 4 0.92None
Thoracicoabdominal ganglion788 184 of 4 2.90Up
Salivary gland1688 1154 of 4 6.12Up
Crop168 84 of 4 0.60Down
Midgut248 174 of 4 0.90None
Tubule340 174 of 4 1.20Up
Hindgut144 54 of 4 0.50Down
Heart196 64 of 4 0.71Down
Fat body234 124 of 4 0.85None
Ovary355 84 of 4 1.30Up
Testis88 54 of 4 0.30Down
Male accessory glands1485 364 of 4 5.40Up
Virgin spermatheca367 74 of 4 1.33Up
Mated spermatheca443 194 of 4 1.61Up
Adult carcass160 104 of 4 0.60Down
Larval CNS485 174 of 4 1.76Up
Larval Salivary gland1811 674 of 4 6.57Up
Larval midgut689 484 of 4 2.50Up
Larval tubule504 54 of 4 1.80Up
Larval hindgut351 204 of 4 1.27Up
Larval fat body350 254 of 4 1.30None
Larval trachea307 224 of 4 1.12None
Larval carcass288 94 of 4 1.05None
S2 cells (growing)402 24 of 4 1.46Up
Whole fly275 144 of 4

Looking for CG9467-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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