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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9473-RB through 18771 annotations produced 1 hits



Mediator complex subunit 6 (MED6):

Annotation Number : CG9473
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0024330
Gbrowse : chr3R:5591752-5594706 (-) // 100.0 //
Probeset : 1641537_s_at
Accessions : protein= NP_001163577; /// NP_001163578; /// NP_651988; /// NP_731403;, nucleotide= NM_001170106; /// NM_001170107; /// NM_143731; /// NM_169310;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
Interpro : 0003713 // transcription coactivator activity // inferred from direct assay /// 0005515 // protein binding // inferred f
FlyMine data for FBgn0024330.
BioGrid reports that CG9473 interacts with CG18780 CG7957 CG8609 CG18780 CG18780 CG7957 .
TRiP has 1 RNAi stocks for FBgn0024330 available for purchase.
VDRC has 3 RNAi stocks for FBgn0024330 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain138 44 of 4 1.50Up
Head57 44 of 4 0.60Down
Eye84 14 of 4 0.90None
Thoracicoabdominal ganglion122 44 of 4 1.30Up
Salivary gland76 24 of 4 0.82Down
Crop75 44 of 4 0.80Down
Midgut44 14 of 4 0.50Down
Tubule96 14 of 4 1.00None
Hindgut57 24 of 4 0.60Down
Heart43 44 of 4 0.47Down
Fat body39 54 of 4 0.42Down
Ovary204 34 of 4 2.20Up
Testis112 84 of 4 1.20None
Male accessory glands95 14 of 4 1.00None
Virgin spermatheca43 34 of 4 0.47Down
Mated spermatheca51 44 of 4 0.55Down
Adult carcass47 44 of 4 0.50Down
Larval CNS245 84 of 4 2.61Up
Larval Salivary gland104 14 of 4 1.12Up
Larval midgut48 24 of 4 0.52Down
Larval tubule83 14 of 4 0.90None
Larval hindgut82 24 of 4 0.88None
Larval fat body66 34 of 4 0.70Down
Larval trachea106 104 of 4 1.14None
Larval carcass83 54 of 4 0.89None
S2 cells (growing)135 54 of 4 1.44Up
Whole fly93 34 of 4

Looking for CG9473-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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