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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9486-RA through 18771 annotations produced 1 hits



(CG9486):

Annotation Number : CG9486
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031791
Gbrowse : chr2L:6255875-6256526 (+) // 100.0 //
Probeset : 1639164_at
Accessions : protein= NP_609005;, nucleotide= NM_135161;
Interpro : 0008080 // N-acetyltransferase activity // inferred from electronic annotation /// 0008415 // acyltransferase activity /
FlyMine data for FBgn0031791.
VDRC has 3 RNAi stocks for FBgn0031791 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain42 ± 34 of 4 9.20Up
Head45 ± 14 of 4 9.70Up
Eye99 ± 94 of 421.34Up
Thoracicoabdominal ganglion50 ± 24 of 410.80Up
Salivary gland11 ± 50 of 4 2.48None
Crop11 ± 10 of 4 2.50Up
Midgut60 ± 34 of 413.10Up
Tubule39 ± 111 of 4 8.50Up
Hindgut12 ± 30 of 4 2.70None
Heart1 ± 00 of 4 0.36Down
Fat body3 ± 40 of 4 0.84None
Ovary1 ± 00 of 4 0.30Down
Testis2 ± 00 of 4 0.40None
Male accessory glands1 ± 00 of 4 0.30Down
Virgin spermatheca4 ± 10 of 4 0.91None
Mated spermatheca3 ± 10 of 4 0.81None
Adult carcass8 ± 10 of 4 1.90None
Larval CNS70 ± 34 of 415.12Up
Larval Salivary gland1 ± 00 of 4 0.30Down
Larval midgut47 ± 14 of 410.16Up
Larval tubule735 ± 714 of 4158.20Up
Larval hindgut44 ± 33 of 4 9.59Up
Larval fat body359 ± 704 of 477.40Up
Larval trachea35 ± 153 of 4 7.71Up
Larval carcass399 ± 504 of 485.91Up
S2 cells (growing)1 ± 00 of 4 0.34Down
Whole fly4 ± 00 of 4

Looking for CG9486-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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