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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9492-RA through 18771 annotations produced 1 hits



(CG9492):

Annotation Number : CG9492
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037726
Gbrowse : chr3R:5477291-5499539 (-) // 100.0 //
Probeset : 1640270_at
Accessions : protein= NP_649923;, nucleotide= NM_141666;
Pathway : 0005858 // axonemal dynein complex // inferred from sequence or structural similarity /// 0005875 // microtubule associa
Interpro : "0000166 // nucleotide binding // inferred from electronic annotation /// 0003774 // motor activity // inferred from seq
FlyMine data for FBgn0037726.
Homophila reports that CG9492 is a close match (0) to human gene CILD7;DNAH11;DNAHBL;DNAHC11;KTGS3 (NP_003768), a gene associated with Ciliary dyskinesia, primary 7, 611884 (3);Kartagener syndrome, 612273 (3).
VDRC has 1 RNAi stocks for FBgn0037726 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.60None
Head7 20 of 4 3.50None
Eye3 10 of 4 1.78None
Thoracicoabdominal ganglion5 10 of 4 2.50None
Salivary gland3 00 of 4 1.83None
Crop0 00 of 4 0.40None
Midgut4 10 of 4 2.20None
Tubule1 00 of 4 0.60Down
Hindgut1 00 of 4 0.60None
Heart2 00 of 4 1.37None
Fat body1 10 of 4 0.64None
Ovary0 00 of 4 0.20None
Testis9 21 of 4 4.50Up
Male accessory glands8 30 of 4 4.30None
Virgin spermatheca1 10 of 4 0.86None
Mated spermatheca3 10 of 4 1.69None
Adult carcass11 10 of 4 5.60Up
Larval CNS1 10 of 4 0.79None
Larval Salivary gland1 00 of 4 0.51None
Larval midgut2 10 of 4 1.19None
Larval tubule3 10 of 4 1.50None
Larval hindgut1 00 of 4 0.51None
Larval fat body4 10 of 4 2.10None
Larval trachea1 10 of 4 0.75None
Larval carcass1 00 of 4 0.63None
S2 cells (growing)15 10 of 4 7.69Up
Whole fly2 00 of 4

Looking for CG9492-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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