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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9494-RA through 18771 annotations produced 1 hits



Tetraspanin 29Fa (Tsp29Fa):

Annotation Number : CG9494
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032074
Gbrowse : chr2L:8933963-8936107 (+) // 100.0 //
Probeset : 1625439_at
Accessions : protein= NP_001162915; /// NP_523515;, nucleotide= NM_001169444; /// NM_078791;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0032074.
BDGP gene expression has embryonic in situ data for Tsp29Fa: 10 pix of staining in 2 body parts.
Homophila reports that CG9494 is a close match (1e-12) to human gene CD151;MER2;PETA3;SFA1 (NP_620599), a gene associated with Nephropathy with pretibial epidermolysis bullosa and deafness, 609057 (3);[Blood group, Raph], 179620 (3).
TRiP has 1 RNAi stocks for FBgn0032074 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032074 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 11 of 4 0.00Down
Head56 ± 24 of 4 0.10Down
Eye13 ± 22 of 4 0.03Down
Thoracicoabdominal ganglion8 ± 00 of 4 0.00Down
Salivary gland1335 ± 794 of 4 2.89Up
Crop24 ± 44 of 4 0.10Down
Midgut4176 ± 1084 of 4 9.00Up
Tubule1728 ± 1134 of 4 3.70Up
Hindgut1643 ± 424 of 4 3.60Up
Heart8 ± 10 of 4 0.02Down
Fat body11 ± 81 of 4 0.03Down
Ovary1 ± 00 of 4 0.00Down
Testis10 ± 03 of 4 0.00Down
Male accessory glands19 ± 22 of 4 0.00Down
Virgin spermatheca481 ± 134 of 4 1.04None
Mated spermatheca524 ± 424 of 4 1.13None
Adult carcass22 ± 31 of 4 0.00Down
Larval CNS6 ± 21 of 4 0.01Down
Larval Salivary gland554 ± 114 of 4 1.20None
Larval midgut4660 ± 1424 of 410.09Up
Larval tubule1464 ± 604 of 4 3.20Up
Larval hindgut888 ± 534 of 4 1.92Up
Larval fat body7 ± 21 of 4 0.00Down
Larval trachea7 ± 41 of 4 0.02Down
Larval carcass9 ± 10 of 4 0.02Down
S2 cells (growing)6 ± 10 of 4 0.01Down
Whole fly461 ± 454 of 4

Looking for CG9494-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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