FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9497-RA through 18771 annotations produced 1 hits

(CG9497):

Annotation Number : CG9497
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031800
Gbrowse : chr2L:6346541-6348151 (-) // 100.0 //
Probeset : 1627801_at
Accessions : protein= NP_609014;, nucleotide= NM_135170;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031800.
VDRC has 2 RNAi stocks for FBgn0031800 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	18 ± 2	3 of 4	0.20	Down
Head	1350 ± 50	4 of 4	12.50	Up
Eye	234 ± 108	4 of 4	2.17	None
Thoracicoabdominal ganglion	13 ± 1	1 of 4	0.10	Down
Salivary gland	10 ± 3	0 of 4	0.10	Down
Crop	8 ± 2	0 of 4	0.10	Down
Midgut	8 ± 3	0 of 4	0.10	Down
Tubule	409 ± 20	4 of 4	3.80	Up
Hindgut	55 ± 6	4 of 4	0.50	Down
Heart	8 ± 1	1 of 4	0.08	Down
Fat body	11 ± 6	0 of 4	0.11	Down
Ovary	4 ± 1	0 of 4	0.00	Down
Testis	3 ± 0	0 of 4	0.00	Down
Male accessory glands	3 ± 0	0 of 4	0.00	Down
Virgin spermatheca	7 ± 1	0 of 4	0.06	Down
Mated spermatheca	12 ± 3	0 of 4	0.11	Down
Adult carcass	64 ± 6	4 of 4	0.60	Down
Larval CNS	3 ± 2	0 of 4	0.03	Down
Larval Salivary gland	2 ± 0	0 of 4	0.03	Down
Larval midgut	3 ± 0	0 of 4	0.03	Down
Larval tubule	18 ± 2	0 of 4	0.20	Down
Larval hindgut	5 ± 1	0 of 4	0.05	Down
Larval fat body	11 ± 3	0 of 4	0.10	Down
Larval trachea	5 ± 5	1 of 4	0.05	Down
Larval carcass	4 ± 1	0 of 4	0.04	Down
S2 cells (growing)	1 ± 0	0 of 4	0.02	Down
Whole fly	108 ± 4	4 of 4

Looking for CG9497-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720