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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9506-RA through 18771 annotations produced 1 hits



slow as molasses (slam):

Annotation Number : CG9506
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0043854
Gbrowse : chr2L:6372414-6377287 (+) // 100.0 //
Probeset : 1638948_at
Accessions : protein= NP_609020;, nucleotide= NM_135176;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0043854.
VDRC has 2 RNAi stocks for FBgn0043854 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head3 10 of 4 0.10Down
Eye3 20 of 4 0.06Down
Thoracicoabdominal ganglion0 00 of 4 0.00Down
Salivary gland4 20 of 4 0.08Down
Crop2 10 of 4 0.00Down
Midgut0 00 of 4 0.00Down
Tubule1 00 of 4 0.00Down
Hindgut0 00 of 4 0.00Down
Heart4 10 of 4 0.09Down
Fat body6 21 of 4 0.12Down
Ovary227 104 of 4 4.30Up
Testis1 00 of 4 0.00Down
Male accessory glands4 10 of 4 0.10Down
Virgin spermatheca5 10 of 4 0.10Down
Mated spermatheca4 10 of 4 0.08Down
Adult carcass6 10 of 4 0.10Down
Larval CNS0 00 of 4 0.01Down
Larval Salivary gland1 00 of 4 0.02Down
Larval midgut6 20 of 4 0.13Down
Larval tubule0 00 of 4 0.00Down
Larval hindgut3 00 of 4 0.06Down
Larval fat body16 30 of 4 0.30Down
Larval trachea1 00 of 4 0.02Down
Larval carcass0 00 of 4 0.01Down
S2 cells (growing)2 10 of 4 0.05Down
Whole fly52 14 of 4

Looking for CG9506-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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