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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9512-RA through 18771 annotations produced 1 hits



(CG9512):

Annotation Number : CG9512
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030593
Gbrowse : chrX:14795981-14799558 (-) // 100.0 //
Probeset : 1631072_at
Accessions : protein= NP_572982;, nucleotide= NM_132754;
Interpro : "0008812 // choline dehydrogenase activity // inferred from sequence or structural similarity /// 0008812 // choline deh
FlyMine data for FBgn0030593.
VDRC has 2 RNAi stocks for FBgn0030593 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain421 ± 504 of 4 0.80None
Head1775 ± 764 of 4 3.30Up
Eye60 ± 224 of 4 0.11Down
Thoracicoabdominal ganglion129 ± 44 of 4 0.20Down
Salivary gland20 ± 61 of 4 0.04Down
Crop96 ± 144 of 4 0.20Down
Midgut100 ± 224 of 4 0.20Down
Tubule5094 ± 5764 of 4 9.40Up
Hindgut28 ± 04 of 4 0.10Down
Heart659 ± 934 of 4 1.21None
Fat body766 ± 1534 of 4 1.41None
Ovary9 ± 13 of 4 0.00Down
Testis2 ± 00 of 4 0.00Down
Male accessory glands6 ± 20 of 4 0.00Down
Virgin spermatheca3 ± 10 of 4 0.01Down
Mated spermatheca2 ± 10 of 4 0.00Down
Adult carcass1626 ± 704 of 4 3.00Up
Larval CNS31 ± 174 of 4 0.06Down
Larval Salivary gland6 ± 03 of 4 0.01Down
Larval midgut249 ± 784 of 4 0.46Down
Larval tubule1270 ± 1064 of 4 2.30Up
Larval hindgut27 ± 54 of 4 0.05Down
Larval fat body67 ± 54 of 4 0.10Down
Larval trachea10 ± 14 of 4 0.02Down
Larval carcass104 ± 184 of 4 0.19Down
S2 cells (growing)1 ± 00 of 4 0.00Down
Whole fly544 ± 534 of 4

Looking for CG9512-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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