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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9514-RA through 18771 annotations produced 1 hits



(CG9514):

Annotation Number : CG9514
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030592
Gbrowse : chrX:14779984-14790921 (-) // 100.0 //
Probeset : 1623983_at
Accessions : protein= NP_572981;, nucleotide= NM_132753;
Interpro : "0008812 // choline dehydrogenase activity // inferred from sequence or structural similarity /// 0008812 // choline deh
FlyMine data for FBgn0030592.
BDGP gene expression has embryonic in situ data for CG9514: 34 pix of staining in 9 body parts.
VDRC has 1 RNAi stocks for FBgn0030592 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 11 of 4 0.40None
Head6 20 of 4 0.40None
Eye6 23 of 4 0.42None
Thoracicoabdominal ganglion7 20 of 4 0.50None
Salivary gland12 42 of 4 0.84None
Crop13 11 of 4 0.90None
Midgut5 10 of 4 0.40None
Tubule5 00 of 4 0.40Down
Hindgut38 34 of 4 2.60Up
Heart1 00 of 4 0.13Down
Fat body12 30 of 4 0.80None
Ovary2 00 of 4 0.20Down
Testis2 10 of 4 0.20Down
Male accessory glands7 11 of 4 0.50None
Virgin spermatheca10 20 of 4 0.68None
Mated spermatheca6 20 of 4 0.41None
Adult carcass9 30 of 4 0.60None
Larval CNS4 22 of 4 0.33None
Larval Salivary gland5 10 of 4 0.37None
Larval midgut7 10 of 4 0.47None
Larval tubule4 00 of 4 0.30Down
Larval hindgut31 04 of 4 2.05Up
Larval fat body5 20 of 4 0.40None
Larval trachea4 21 of 4 0.29Down
Larval carcass8 01 of 4 0.53None
S2 cells (growing)3 00 of 4 0.21Down
Whole fly15 32 of 4

Looking for CG9514-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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