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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG9519-RA through 18771 annotations produced 1 hits


(CG9519):

Annotation Number : CG9519
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030589
Gbrowse : chrX:14748357-14750394 (-) // 100.0 //
Probeset : 1640479_at
Accessions : protein= NP_572978;, nucleotide= NM_132750;
Interpro : "0008812 // choline dehydrogenase activity // inferred from sequence or structural similarity /// 0008812 // choline deh
FlyMine data for FBgn0030589.
BDGP gene expression has embryonic in situ data for CG9519: 4 pix of staining in 1 body parts.
VDRC has 5 RNAi stocks for FBgn0030589 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 11 of 4 0.10Down
Head268 ± 154 of 4 3.70Up
Eye22 ± 54 of 4 0.32Down
Thoracicoabdominal ganglion5 ± 12 of 4 0.10Down
Salivary gland9 ± 30 of 4 0.14Down
Crop5 ± 10 of 4 0.10Down
Midgut3 ± 00 of 4 0.10Down
Tubule4 ± 00 of 4 0.10Down
Hindgut6 ± 10 of 4 0.10Down
Heart4 ± 10 of 4 0.07Down
Fat body6 ± 40 of 4 0.09Down
Ovary2 ± 10 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands2137 ± 974 of 429.60Up
Virgin spermatheca6 ± 00 of 4 0.09Down
Mated spermatheca5 ± 11 of 4 0.08Down
Adult carcass162 ± 154 of 4 2.20Up
Larval CNS4 ± 21 of 4 0.06Down
Larval Salivary gland3 ± 10 of 4 0.04Down
Larval midgut5 ± 10 of 4 0.07Down
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut3 ± 00 of 4 0.05Down
Larval fat body5 ± 30 of 4 0.10Down
Larval trachea2 ± 10 of 4 0.03Down
Larval carcass7 ± 10 of 4 0.11Down
S2 cells (growing)1 ± 00 of 4 0.02Down
Whole fly72 ± 74 of 4

Looking for CG9519-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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