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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG9525-RA through 18771 annotations produced 1 hits


Annotation Number : CG9525
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032080
Gbrowse : chr2L:8960317-8962354 (-) // 100.0 //
Probeset : 1632347_at
Accessions : protein= NP_609260;, nucleotide= NM_135416;
FlyMine data for FBgn0032080.
VDRC has 1 RNAi stocks for FBgn0032080 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.40None
Head2 00 of 4 0.40Down
Eye2 10 of 4 0.51None
Thoracicoabdominal ganglion2 10 of 4 0.40None
Salivary gland11 31 of 4 2.14None
Crop3 00 of 4 0.60None
Midgut2 00 of 4 0.50None
Tubule1 00 of 4 0.30Down
Hindgut0 00 of 4 0.10Down
Heart0 00 of 4 0.15Down
Fat body3 20 of 4 0.60None
Ovary1 00 of 4 0.20Down
Testis2 11 of 4 0.50None
Male accessory glands409 254 of 477.70Up
Virgin spermatheca1 00 of 4 0.24Down
Mated spermatheca2 10 of 4 0.51None
Adult carcass3 20 of 4 0.70None
Larval CNS0 00 of 4 0.06Down
Larval Salivary gland3 00 of 4 0.58None
Larval midgut2 00 of 4 0.44None
Larval tubule1 00 of 4 0.20Down
Larval hindgut1 00 of 4 0.28Down
Larval fat body1 10 of 4 0.40None
Larval trachea0 00 of 4 0.18Down
Larval carcass2 00 of 4 0.54None
S2 cells (growing)5 01 of 4 0.96None
Whole fly5 10 of 4

Looking for CG9525-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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