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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9527-RA through 18771 annotations produced 1 hits



(CG9527):

Annotation Number : CG9527
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031813
Gbrowse : chr2L:6445069-6448016 (-) // 100.0 //
Probeset : 1637461_at
Accessions : protein= NP_001137800; /// NP_609027;, nucleotide= NM_001144328; /// NM_135183;
Pathway : engulfment // inferred from mutant phenotype /// 0008152 // metabolic process // inferred from electronic annotation //
Interpro : 0005777 // peroxisome // inferred from electronic annotation
FlyMine data for FBgn0031813.
BDGP gene expression has embryonic in situ data for CG9527: 13 pix of staining in 5 body parts.
Homophila reports that CG9527 is a close match (2e-11) to human gene ACADVL;VLCAD (NP_001029031), a gene associated with VLCAD deficiency, 201475 (3).
BioGrid reports that CG9527 interacts with CG9933 .
VDRC has 2 RNAi stocks for FBgn0031813 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain102 ± 24 of 4 0.30Down
Head265 ± 104 of 4 0.70None
Eye126 ± 34 of 4 0.32Down
Thoracicoabdominal ganglion144 ± 34 of 4 0.40Down
Salivary gland84 ± 64 of 4 0.22Down
Crop226 ± 34 of 4 0.60None
Midgut3188 ± 634 of 4 8.20Up
Tubule184 ± 84 of 4 0.50Down
Hindgut289 ± 84 of 4 0.70None
Heart330 ± 84 of 4 0.85None
Fat body756 ± 954 of 4 1.93Up
Ovary50 ± 14 of 4 0.10Down
Testis21 ± 14 of 4 0.10Down
Male accessory glands102 ± 14 of 4 0.30Down
Virgin spermatheca348 ± 134 of 4 0.89None
Mated spermatheca393 ± 304 of 4 1.01None
Adult carcass437 ± 164 of 4 1.10None
Larval CNS49 ± 54 of 4 0.13Down
Larval Salivary gland64 ± 64 of 4 0.16Down
Larval midgut2904 ± 1294 of 4 7.43Up
Larval tubule217 ± 54 of 4 0.60None
Larval hindgut242 ± 114 of 4 0.62None
Larval fat body1257 ± 1094 of 4 3.20Up
Larval trachea181 ± 364 of 4 0.46Down
Larval carcass149 ± 84 of 4 0.38Down
S2 cells (growing)139 ± 24 of 4 0.36Down
Whole fly390 ± 624 of 4

Looking for CG9527-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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