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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9536-RA through 18771 annotations produced 1 hits



(CG9536):

Annotation Number : CG9536
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031818
Gbrowse : chr2L:6474437-6476972 (-) // 99.79 //
Probeset : 1632301_at
Accessions : protein= NP_609033;, nucleotide= NM_135189;
FlyMine data for FBgn0031818.
BDGP gene expression has embryonic in situ data for CG9536: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0031818 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain226 ± 34 of 4 1.20Up
Head171 ± 24 of 4 0.90None
Eye173 ± 54 of 4 0.95None
Thoracicoabdominal ganglion231 ± 74 of 4 1.30Up
Salivary gland431 ± 184 of 4 2.37Up
Crop417 ± 104 of 4 2.30Up
Midgut310 ± 104 of 4 1.70Up
Tubule520 ± 124 of 4 2.90Up
Hindgut183 ± 64 of 4 1.00None
Heart206 ± 124 of 4 1.13None
Fat body173 ± 134 of 4 0.95None
Ovary308 ± 124 of 4 1.70Up
Testis165 ± 34 of 4 0.90None
Male accessory glands479 ± 144 of 4 2.60Up
Virgin spermatheca223 ± 104 of 4 1.22Up
Mated spermatheca289 ± 244 of 4 1.59Up
Adult carcass211 ± 84 of 4 1.20None
Larval CNS118 ± 24 of 4 0.65Down
Larval Salivary gland606 ± 684 of 4 3.33Up
Larval midgut300 ± 24 of 4 1.65Up
Larval tubule496 ± 754 of 4 2.70Up
Larval hindgut182 ± 54 of 4 1.00None
Larval fat body154 ± 124 of 4 0.80None
Larval trachea174 ± 84 of 4 0.95None
Larval carcass191 ± 24 of 4 1.05None
S2 cells (growing)240 ± 34 of 4 1.32Up
Whole fly182 ± 104 of 4

Looking for CG9536-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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