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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9537-RA through 18771 annotations produced 1 hits



Daxx-like protein (DLP):

Annotation Number : CG9537
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031820
Gbrowse : chr2L:6480955-6487585 (+) // 100.0 //
Probeset : 1630023_at
Accessions : protein= NP_609035;, nucleotide= NM_135191;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0031820.
VDRC has 2 RNAi stocks for FBgn0031820 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain212 44 of 4 1.60Up
Head100 34 of 4 0.80Down
Eye119 54 of 4 0.90None
Thoracicoabdominal ganglion150 64 of 4 1.10None
Salivary gland198 64 of 4 1.49Up
Crop114 34 of 4 0.90None
Midgut117 24 of 4 0.90None
Tubule104 24 of 4 0.80Down
Hindgut118 74 of 4 0.90None
Heart62 44 of 4 0.47Down
Fat body95 224 of 4 0.72Down
Ovary398 34 of 4 3.00Up
Testis203 34 of 4 1.50Up
Male accessory glands156 114 of 4 1.20None
Virgin spermatheca106 94 of 4 0.80None
Mated spermatheca120 44 of 4 0.91None
Adult carcass88 54 of 4 0.70Down
Larval CNS320 204 of 4 2.41Up
Larval Salivary gland283 104 of 4 2.13Up
Larval midgut95 34 of 4 0.71Down
Larval tubule102 14 of 4 0.80Down
Larval hindgut105 84 of 4 0.79None
Larval fat body124 234 of 4 0.90None
Larval trachea161 124 of 4 1.21Up
Larval carcass136 34 of 4 1.02None
S2 cells (growing)123 44 of 4 0.93None
Whole fly133 84 of 4

Looking for CG9537-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime