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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9539-RA through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chr2L:6477532-6480489 (-) // 100.0 //):

Annotation Number : CG9539
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : chr2-17-31
Gbrowse :
Probeset : 1638663_at
Accessions : protein= , nucleotide=
Interpro : "0006616 // SRP-dependent cotranslational protein targeting to membrane
FlyMine data for chr2-17-31.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain434 54 of 4 0.50Down
Head726 774 of 4 0.90None
Eye335 244 of 4 0.40Down
Thoracicoabdominal ganglion448 174 of 4 0.50Down
Salivary gland2424 514 of 4 2.88Up
Crop756 274 of 4 0.90None
Midgut1800 184 of 4 2.10Up
Tubule1181 774 of 4 1.40Up
Hindgut724 34 of 4 0.90Down
Heart666 444 of 4 0.79Down
Fat body1391 2094 of 4 1.66Up
Ovary704 224 of 4 0.80Down
Testis337 144 of 4 0.40Down
Male accessory glands3529 544 of 4 4.20Up
Virgin spermatheca1590 314 of 4 1.89Up
Mated spermatheca1877 1274 of 4 2.23Up
Adult carcass1039 314 of 4 1.20Up
Larval CNS630 144 of 4 0.75Down
Larval Salivary gland3625 3244 of 4 4.31Up
Larval midgut1208 544 of 4 1.44Up
Larval tubule887 254 of 4 1.10None
Larval hindgut877 344 of 4 1.04None
Larval fat body1977 3034 of 4 2.40Up
Larval trachea800 1694 of 4 0.95None
Larval carcass1090 584 of 4 1.30Up
S2 cells (growing)1624 274 of 4 1.93Up
Whole fly840 334 of 4

Looking for CG9539-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime