FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9540-RA through 18771 annotations produced 1 hits

Antigen 5-related 2 (Ag5r2):

Annotation Number : CG9540
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020508
Gbrowse : chrX:14676984-14678075 (-) // 100.0 //
Probeset : 1629199_at
Accessions : protein= NP_524689;, nucleotide= NM_079950;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005576 // extracellular region // inferred f
FlyMine data for FBgn0020508.
VDRC has 2 RNAi stocks for FBgn0020508 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	3 ± 0	0 of 4	0.00	Down
Head	6 ± 0	0 of 4	0.00	Down
Eye	7 ± 2	2 of 4	0.01	Down
Thoracicoabdominal ganglion	5 ± 1	0 of 4	0.00	Down
Salivary gland	17 ± 3	0 of 4	0.04	Down
Crop	12 ± 1	1 of 4	0.00	Down
Midgut	3496 ± 182	4 of 4	7.00	Up
Tubule	4 ± 1	0 of 4	0.00	Down
Hindgut	7 ± 0	0 of 4	0.00	Down
Heart	8 ± 0	0 of 4	0.02	Down
Fat body	10 ± 3	1 of 4	0.02	Down
Ovary	6 ± 2	0 of 4	0.00	Down
Testis	2 ± 0	0 of 4	0.00	Down
Male accessory glands	9 ± 2	0 of 4	0.00	Down
Virgin spermatheca	7 ± 2	0 of 4	0.02	Down
Mated spermatheca	9 ± 2	1 of 4	0.02	Down
Adult carcass	7 ± 3	0 of 4	0.00	Down
Larval CNS	8 ± 3	2 of 4	0.02	Down
Larval Salivary gland	14 ± 6	0 of 4	0.03	Down
Larval midgut	5876 ± 181	4 of 4	11.73	Up
Larval tubule	2 ± 0	0 of 4	0.00	Down
Larval hindgut	48 ± 7	4 of 4	0.10	Down
Larval fat body	29 ± 13	1 of 4	0.10	Down
Larval trachea	30 ± 37	2 of 4	0.06	Down
Larval carcass	20 ± 6	3 of 4	0.04	Down
S2 cells (growing)	5 ± 2	0 of 4	0.01	Down
Whole fly	500 ± 131	4 of 4

Looking for CG9540-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720