FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG9541-RA through 18771 annotations produced 1 hits

(CG9541):

Annotation Number : CG9541
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032083
Gbrowse : chr2L:8970800-8973396 (-) // 100.0 //
Probeset : 1629772_at
Accessions : protein= NP_609263;, nucleotide= NM_135419;
Pathway : nucleoside
Interpro : nucleotide and nucleic acid metabolic process // inferred from electronic annotation"
FlyMine data for FBgn0032083.
Homophila reports that CG9541 is a close match (4e-15) to human gene AK1 (NP_000467), a gene associated with Hemolytic anemia due to adenylate kinase deficiency (3).
VDRC has 3 RNAi stocks for FBgn0032083 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	16 ± 0	4 of 4	2.50	Up
Head	45 ± 2	4 of 4	6.90	Up
Eye	6 ± 1	1 of 4	0.98	None
Thoracicoabdominal ganglion	7 ± 2	0 of 4	1.20	None
Salivary gland	11 ± 3	0 of 4	1.68	None
Crop	9 ± 1	0 of 4	1.40	None
Midgut	9 ± 1	0 of 4	1.40	None
Tubule	8 ± 0	0 of 4	1.40	Up
Hindgut	5 ± 1	0 of 4	0.90	None
Heart	3 ± 0	0 of 4	0.54	Down
Fat body	6 ± 4	0 of 4	1.01	None
Ovary	1 ± 0	0 of 4	0.20	Down
Testis	9 ± 0	2 of 4	1.40	None
Male accessory glands	4 ± 1	0 of 4	0.60	None
Virgin spermatheca	8 ± 2	1 of 4	1.33	None
Mated spermatheca	11 ± 2	0 of 4	1.68	None
Adult carcass	10 ± 4	0 of 4	1.60	None
Larval CNS	4 ± 2	0 of 4	0.67	None
Larval Salivary gland	5 ± 1	0 of 4	0.77	None
Larval midgut	3 ± 2	0 of 4	0.58	None
Larval tubule	5 ± 1	0 of 4	0.90	None
Larval hindgut	3 ± 0	0 of 4	0.57	Down
Larval fat body	6 ± 2	0 of 4	1.00	None
Larval trachea	3 ± 2	0 of 4	0.57	None
Larval carcass	1 ± 0	0 of 4	0.27	Down
S2 cells (growing)	5 ± 1	0 of 4	0.81	None
Whole fly	6 ± 0	0 of 4

Looking for CG9541-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720