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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG9541-RA through 18771 annotations produced 1 hits


Annotation Number : CG9541
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032083
Gbrowse : chr2L:8970800-8973396 (-) // 100.0 //
Probeset : 1629772_at
Accessions : protein= NP_609263;, nucleotide= NM_135419;
Pathway : nucleoside
Interpro : nucleotide and nucleic acid metabolic process // inferred from electronic annotation"
FlyMine data for FBgn0032083.
Homophila reports that CG9541 is a close match (4e-15) to human gene AK1 (NP_000467), a gene associated with Hemolytic anemia due to adenylate kinase deficiency (3).
VDRC has 3 RNAi stocks for FBgn0032083 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 04 of 4 2.50Up
Head45 24 of 4 6.90Up
Eye6 11 of 4 0.98None
Thoracicoabdominal ganglion7 20 of 4 1.20None
Salivary gland11 30 of 4 1.68None
Crop9 10 of 4 1.40None
Midgut9 10 of 4 1.40None
Tubule8 00 of 4 1.40Up
Hindgut5 10 of 4 0.90None
Heart3 00 of 4 0.54Down
Fat body6 40 of 4 1.01None
Ovary1 00 of 4 0.20Down
Testis9 02 of 4 1.40None
Male accessory glands4 10 of 4 0.60None
Virgin spermatheca8 21 of 4 1.33None
Mated spermatheca11 20 of 4 1.68None
Adult carcass10 40 of 4 1.60None
Larval CNS4 20 of 4 0.67None
Larval Salivary gland5 10 of 4 0.77None
Larval midgut3 20 of 4 0.58None
Larval tubule5 10 of 4 0.90None
Larval hindgut3 00 of 4 0.57Down
Larval fat body6 20 of 4 1.00None
Larval trachea3 20 of 4 0.57None
Larval carcass1 00 of 4 0.27Down
S2 cells (growing)5 10 of 4 0.81None
Whole fly6 00 of 4

Looking for CG9541-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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