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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9547-RA through 18771 annotations produced 1 hits



(CG9547):

Annotation Number : CG9547
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031824
Gbrowse : chr2L:6492971-6494527 (-) // 100.0 //
Probeset : 1637142_at
Accessions : protein= NP_609040;, nucleotide= NM_135196;
Pathway : 0005759 // mitochondrial matrix // inferred from sequence or structural similarity /// 0005875 // microtubule associated
Interpro : "0003995 // acyl-CoA dehydrogenase activity // inferred from electronic annotation /// 0004361 // glutaryl-CoA dehydroge
FlyMine data for FBgn0031824.
Homophila reports that CG9547 is a close match (1e-27) to human gene ACADL;LCAD (NP_001599), a gene associated with Acyl-CoA dehydrogenase, long chain, deficiency of, 201460 (3).
BioGrid reports that CG9547 interacts with CG9925 .
VDRC has 1 RNAi stocks for FBgn0031824 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain58 ± 14 of 4 0.30Down
Head206 ± 194 of 4 1.10None
Eye87 ± 164 of 4 0.48Down
Thoracicoabdominal ganglion74 ± 64 of 4 0.40Down
Salivary gland310 ± 64 of 4 1.69Up
Crop99 ± 54 of 4 0.50Down
Midgut128 ± 54 of 4 0.70Down
Tubule1458 ± 1864 of 4 7.90Up
Hindgut229 ± 74 of 4 1.30Up
Heart265 ± 194 of 4 1.44Up
Fat body345 ± 734 of 4 1.88Up
Ovary223 ± 34 of 4 1.20Up
Testis15 ± 04 of 4 0.10Down
Male accessory glands158 ± 124 of 4 0.90None
Virgin spermatheca707 ± 224 of 4 3.85Up
Mated spermatheca416 ± 484 of 4 2.27Up
Adult carcass195 ± 64 of 4 1.10None
Larval CNS63 ± 44 of 4 0.35Down
Larval Salivary gland231 ± 124 of 4 1.26Up
Larval midgut506 ± 354 of 4 2.76Up
Larval tubule646 ± 434 of 4 3.50Up
Larval hindgut244 ± 134 of 4 1.33Up
Larval fat body686 ± 694 of 4 3.70Up
Larval trachea193 ± 134 of 4 1.06None
Larval carcass136 ± 104 of 4 0.74Down
S2 cells (growing)89 ± 14 of 4 0.49Down
Whole fly183 ± 44 of 4

Looking for CG9547-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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