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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9568-RA through 18771 annotations produced 1 hits



(CG9568):

Annotation Number : CG9568
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032087
Gbrowse : chr2L:9010598-9011344 (+) // 100.0 //
Probeset : 1639297_at
Accessions : protein= NP_609267;, nucleotide= NM_135423;
FlyMine data for FBgn0032087.
BDGP gene expression has embryonic in situ data for CG9568: 13 pix of staining in 5 body parts.
VDRC has 2 RNAi stocks for FBgn0032087 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head2 ± 00 of 4 0.00Down
Eye6 ± 30 of 4 0.00Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland7 ± 20 of 4 0.00Down
Crop10 ± 30 of 4 0.00Down
Midgut5435 ± 1444 of 4 3.30Up
Tubule2027 ± 4124 of 4 1.20None
Hindgut3162 ± 864 of 4 1.90Up
Heart6 ± 20 of 4 0.00Down
Fat body17 ± 230 of 4 0.01Down
Ovary1 ± 00 of 4 0.00Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands5 ± 10 of 4 0.00Down
Virgin spermatheca10 ± 10 of 4 0.01Down
Mated spermatheca13 ± 20 of 4 0.01Down
Adult carcass7 ± 20 of 4 0.00Down
Larval CNS2 ± 20 of 4 0.00Down
Larval Salivary gland10 ± 20 of 4 0.01Down
Larval midgut5271 ± 2834 of 4 3.20Up
Larval tubule1177 ± 2524 of 4 0.70None
Larval hindgut3703 ± 614 of 4 2.25Up
Larval fat body11 ± 20 of 4 0.00Down
Larval trachea20 ± 281 of 4 0.01Down
Larval carcass7 ± 10 of 4 0.00Down
S2 cells (growing)2 ± 00 of 4 0.00Down
Whole fly1645 ± 1204 of 4

Looking for CG9568-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime