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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9569-RA through 18771 annotations produced 1 hits



chrX:19920431-19922900 (-) // 100.0 // (Dopamine 2-like receptor):

Annotation Number : CG9569
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1637270_at
Accessions : protein= , nucleotide= NP_001014757; /// NP_001014758; /// NP_001014759; /// NP_001014760; /// NP_001027080;
Pathway : 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein
Interpro : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
FlyMine data for full length.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 01 of 4 3.30Up
Head0 ± 00 of 4 0.20None
Eye1 ± 00 of 4 0.48None
Thoracicoabdominal ganglion5 ± 20 of 4 2.20None
Salivary gland10 ± 70 of 4 4.06None
Crop0 ± 00 of 4 0.30None
Midgut6 ± 20 of 4 2.30None
Tubule1 ± 00 of 4 0.40Down
Hindgut0 ± 00 of 4 0.20None
Heart3 ± 10 of 4 1.47None
Fat body1 ± 00 of 4 0.62None
Ovary0 ± 00 of 4 0.20None
Testis1 ± 00 of 4 0.60None
Male accessory glands1 ± 00 of 4 0.50None
Virgin spermatheca1 ± 00 of 4 0.47None
Mated spermatheca2 ± 10 of 4 0.99None
Adult carcass2 ± 00 of 4 0.70None
Larval CNS2 ± 10 of 4 0.90None
Larval Salivary gland1 ± 00 of 4 0.51None
Larval midgut2 ± 00 of 4 0.79None
Larval tubule0 ± 00 of 4 0.20None
Larval hindgut0 ± 00 of 4 0.26None
Larval fat body1 ± 00 of 4 0.40None
Larval trachea1 ± 00 of 4 0.44None
Larval carcass1 ± 00 of 4 0.42None
S2 cells (growing)0 ± 00 of 4 0.35None
Whole fly2 ± 10 of 4

Looking for CG9569-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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