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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9577-RA through 18771 annotations produced 1 hits



March 2006 (FlyBase/BDGP 5.3) (chrX:20060707-20062119 (+) // 100.0 //):

Annotation Number : CG9577
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse :
Probeset : 1634844_at
Accessions : protein= EC:5.3.3.-, nucleotide=
Interpro : 0008152 // metabolic process // inferred from electronic annotation
Homophila reports that CG9577 is a close match (1e-12) to human gene HADHA;MTPA (NP_000173), a gene associated with Fatty liver, acute, of pregnancy, 609016 (3);HELLP syndrome, maternal, of pregnancy, 609016 (3);LCHAD deficiency, 609016 (3);Trifunctional protein deficiency, 609015 (3).
BioGrid reports that CG9577 interacts with CG9577 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain131 ± 54 of 4 0.40Down
Head369 ± 114 of 4 1.10Up
Eye278 ± 204 of 4 0.86None
Thoracicoabdominal ganglion170 ± 64 of 4 0.50Down
Salivary gland309 ± 234 of 4 0.96None
Crop1343 ± 644 of 4 4.20Up
Midgut605 ± 384 of 4 1.90Up
Tubule228 ± 54 of 4 0.70Down
Hindgut644 ± 194 of 4 2.00Up
Heart909 ± 364 of 4 2.81Up
Fat body1008 ± 614 of 4 3.12Up
Ovary353 ± 84 of 4 1.10None
Testis78 ± 14 of 4 0.20Down
Male accessory glands307 ± 184 of 4 0.90None
Virgin spermatheca662 ± 214 of 4 2.05Up
Mated spermatheca703 ± 654 of 4 2.18Up
Adult carcass760 ± 194 of 4 2.40Up
Larval CNS432 ± 364 of 4 1.34Up
Larval Salivary gland673 ± 284 of 4 2.08Up
Larval midgut1042 ± 764 of 4 3.22Up
Larval tubule1074 ± 504 of 4 3.30Up
Larval hindgut486 ± 354 of 4 1.51Up
Larval fat body3983 ± 4494 of 412.30Up
Larval trachea591 ± 414 of 4 1.83Up
Larval carcass557 ± 314 of 4 1.73Up
S2 cells (growing)398 ± 04 of 4 1.23Up
Whole fly323 ± 134 of 4

Looking for CG9577-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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