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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9590-RA through 18771 annotations produced 1 hits



(CG9590):

Annotation Number : CG9590
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038360
Gbrowse : chr3R:11612422-11614063 (+) // 100.0 //
Probeset : 1632640_at
Accessions : protein= NP_650488;, nucleotide= NM_142231;
FlyMine data for FBgn0038360.
BDGP gene expression has embryonic in situ data for CG9590: 11 pix of staining in 6 body parts.
VDRC has 3 RNAi stocks for FBgn0038360 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain197 ± 44 of 4 1.10Up
Head200 ± 74 of 4 1.10None
Eye216 ± 74 of 4 1.19Up
Thoracicoabdominal ganglion224 ± 14 of 4 1.20Up
Salivary gland632 ± 314 of 4 3.47Up
Crop287 ± 114 of 4 1.60Up
Midgut238 ± 144 of 4 1.30Up
Tubule378 ± 204 of 4 2.10Up
Hindgut252 ± 84 of 4 1.40Up
Heart225 ± 84 of 4 1.24Up
Fat body237 ± 124 of 4 1.30Up
Ovary226 ± 64 of 4 1.20Up
Testis230 ± 84 of 4 1.30Up
Male accessory glands427 ± 64 of 4 2.30Up
Virgin spermatheca320 ± 144 of 4 1.76Up
Mated spermatheca353 ± 244 of 4 1.94Up
Adult carcass206 ± 114 of 4 1.10None
Larval CNS155 ± 44 of 4 0.85Down
Larval Salivary gland837 ± 304 of 4 4.59Up
Larval midgut203 ± 74 of 4 1.12None
Larval tubule386 ± 84 of 4 2.10Up
Larval hindgut224 ± 74 of 4 1.23Up
Larval fat body335 ± 264 of 4 1.80Up
Larval trachea226 ± 304 of 4 1.24None
Larval carcass204 ± 104 of 4 1.12None
S2 cells (growing)180 ± 64 of 4 0.99None
Whole fly182 ± 14 of 4

Looking for CG9590-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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