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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9591-RA through 18771 annotations produced 1 hits



oocyte maintenance defects (omd):

Annotation Number : CG9591
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038168
Gbrowse : chr3R:9505150-9512932 (-) // 100.0 //
Probeset : 1629613_at
Accessions : protein= NP_650303;, nucleotide= NM_142046;
FlyMine data for FBgn0038168.
VDRC has 2 RNAi stocks for FBgn0038168 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain34 ± 14 of 4 1.00None
Head21 ± 13 of 4 0.60Down
Eye30 ± 14 of 4 0.84None
Thoracicoabdominal ganglion40 ± 24 of 4 1.10None
Salivary gland49 ± 63 of 4 1.38None
Crop37 ± 24 of 4 1.00None
Midgut23 ± 32 of 4 0.70Down
Tubule37 ± 14 of 4 1.00None
Hindgut31 ± 04 of 4 0.90None
Heart43 ± 24 of 4 1.20None
Fat body15 ± 81 of 4 0.44Down
Ovary83 ± 34 of 4 2.30Up
Testis60 ± 34 of 4 1.70Up
Male accessory glands44 ± 44 of 4 1.20None
Virgin spermatheca41 ± 24 of 4 1.15None
Mated spermatheca39 ± 14 of 4 1.10None
Adult carcass29 ± 33 of 4 0.80None
Larval CNS51 ± 14 of 4 1.45Up
Larval Salivary gland52 ± 34 of 4 1.47Up
Larval midgut15 ± 20 of 4 0.44Down
Larval tubule25 ± 24 of 4 0.70Down
Larval hindgut28 ± 04 of 4 0.79None
Larval fat body22 ± 53 of 4 0.60None
Larval trachea49 ± 24 of 4 1.37Up
Larval carcass27 ± 23 of 4 0.76None
S2 cells (growing)37 ± 34 of 4 1.05None
Whole fly35 ± 24 of 4

Looking for CG9591-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime