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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9596-RA through 18771 annotations produced 1 hits



(CG9596):

Annotation Number : CG9596
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031832
Gbrowse : chr2L:6560172-6561609 (-) // 100.0 //
Probeset : 1636478_at
Accessions : protein= NP_995638;, nucleotide= NM_205916;
Interpro : 0003743 // translation initiation factor activity // inferred from electronic annotation /// 0005515 // protein binding
FlyMine data for FBgn0031832.
BDGP gene expression has embryonic in situ data for CG9596: 14 pix of staining in 10 body parts.
VDRC has 3 RNAi stocks for FBgn0031832 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain21 ± 14 of 4 0.40Down
Head24 ± 34 of 4 0.40Down
Eye22 ± 14 of 4 0.37Down
Thoracicoabdominal ganglion36 ± 04 of 4 0.60Down
Salivary gland83 ± 24 of 4 1.36Up
Crop60 ± 34 of 4 1.00None
Midgut37 ± 34 of 4 0.60Down
Tubule48 ± 24 of 4 0.80Down
Hindgut43 ± 24 of 4 0.70Down
Heart57 ± 74 of 4 0.94None
Fat body53 ± 64 of 4 0.87None
Ovary144 ± 44 of 4 2.40Up
Testis11 ± 14 of 4 0.20Down
Male accessory glands114 ± 64 of 4 1.90Up
Virgin spermatheca70 ± 14 of 4 1.15None
Mated spermatheca74 ± 24 of 4 1.21Up
Adult carcass47 ± 64 of 4 0.80None
Larval CNS96 ± 124 of 4 1.58Up
Larval Salivary gland76 ± 34 of 4 1.26Up
Larval midgut48 ± 44 of 4 0.79None
Larval tubule54 ± 24 of 4 0.90None
Larval hindgut60 ± 24 of 4 1.00None
Larval fat body54 ± 84 of 4 0.90None
Larval trachea108 ± 154 of 4 1.77Up
Larval carcass70 ± 94 of 4 1.15None
S2 cells (growing)91 ± 34 of 4 1.50Up
Whole fly61 ± 34 of 4

Looking for CG9596-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime