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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9610-RB through 18771 annotations produced 1 hits



pox meso (Poxm):

Annotation Number : CG9610
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0003129
Gbrowse : chr3R:4145531-4147300 (-) // 100.0 //
Probeset : 1637078_a_at
Accessions : protein= NP_001036687;, nucleotide= NM_001043222;
Pathway : 0005634 // nucleus // inferred from direct assay /// 0005634 // nucleus // inferred from sequence or structural similari
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0003704 // specific RNA polymerase II transcription fa
FlyMine data for FBgn0003129.
Homophila reports that CG9610 is a close match (6e-34) to human gene KPD;MODY9;PAX4 (NP_006184), a gene associated with Diabetes mellitus, type 2, 125853 (3);Maturity-onset diabetes of the young, type IX, 612225 (3).
BioGrid reports that CG9610 interacts with CG10798 CG3938 .
TRiP has 1 RNAi stocks for FBgn0003129 available for purchase.
VDRC has 3 RNAi stocks for FBgn0003129 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.30Down
Head2 10 of 4 1.20None
Eye2 10 of 4 1.11None
Thoracicoabdominal ganglion1 00 of 4 0.50Down
Salivary gland2 00 of 4 0.89None
Crop76 74 of 433.80Up
Midgut4 20 of 4 2.10None
Tubule1 00 of 4 0.80Down
Hindgut5 10 of 4 2.50None
Heart1 00 of 4 0.48Down
Fat body2 00 of 4 0.86None
Ovary1 00 of 4 0.60None
Testis7 12 of 4 3.20Up
Male accessory glands16 20 of 4 7.10Up
Virgin spermatheca1 00 of 4 0.56Down
Mated spermatheca1 00 of 4 0.60Down
Adult carcass5 20 of 4 2.50None
Larval CNS2 10 of 4 0.89None
Larval Salivary gland1 00 of 4 0.78None
Larval midgut1 00 of 4 0.67None
Larval tubule1 00 of 4 0.50Down
Larval hindgut10 20 of 4 4.64Up
Larval fat body19 30 of 4 8.70Up
Larval trachea0 00 of 4 0.36Down
Larval carcass1 00 of 4 0.78None
S2 cells (growing)1 00 of 4 0.68None
Whole fly2 00 of 4

Looking for CG9610-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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