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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9611-RA through 18771 annotations produced 1 hits



gp150-like (f-cup):

Annotation Number : CG9611
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028487
Gbrowse : chr3R:9520984-9526560 (-) // 99.77 //
Probeset : 1641603_s_at
Accessions : protein= NP_001097772; /// NP_001097773; /// NP_001097774; /// NP_650306; /// NP_731852;, nucleotide= NM_001104302; /// NM_001104303; /// NM_001104304; /// NM_142049; /// NM_169550;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0028487.
Homophila reports that CG9611 is a close match (1e-15) to human gene LRRC8;KIAA1437 (NP_062540), a gene associated with Agammaglobulinemia, non-Bruton type, 601495 (3).
VDRC has 2 RNAi stocks for FBgn0028487 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain310 ± 144 of 4 1.40Up
Head318 ± 134 of 4 1.40Up
Eye502 ± 124 of 4 2.25Up
Thoracicoabdominal ganglion297 ± 74 of 4 1.30Up
Salivary gland143 ± 54 of 4 0.65Down
Crop143 ± 134 of 4 0.60Down
Midgut132 ± 74 of 4 0.60Down
Tubule205 ± 114 of 4 0.90None
Hindgut196 ± 14 of 4 0.90Down
Heart211 ± 74 of 4 0.95None
Fat body194 ± 214 of 4 0.87None
Ovary148 ± 34 of 4 0.70Down
Testis1419 ± 524 of 4 6.40Up
Male accessory glands202 ± 164 of 4 0.90None
Virgin spermatheca129 ± 54 of 4 0.58Down
Mated spermatheca142 ± 54 of 4 0.64Down
Adult carcass257 ± 164 of 4 1.20None
Larval CNS125 ± 44 of 4 0.56Down
Larval Salivary gland69 ± 54 of 4 0.31Down
Larval midgut131 ± 64 of 4 0.59Down
Larval tubule181 ± 124 of 4 0.80Down
Larval hindgut117 ± 184 of 4 0.53Down
Larval fat body157 ± 564 of 4 0.70None
Larval trachea81 ± 264 of 4 0.37Down
Larval carcass119 ± 94 of 4 0.54Down
S2 cells (growing)101 ± 24 of 4 0.46Down
Whole fly222 ± 74 of 4

Looking for CG9611-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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