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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9616-RA through 18771 annotations produced 1 hits



(CG9616):

Annotation Number : CG9616
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038214
Gbrowse : chr3R:10070707-10071179 (-) // 100.0 //
Probeset : 1631693_at
Accessions : protein= NP_650347;, nucleotide= NM_142090;
FlyMine data for FBgn0038214.
VDRC has 2 RNAi stocks for FBgn0038214 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 03 of 4 0.20Down
Head43 94 of 4 1.60None
Eye22 24 of 4 0.84None
Thoracicoabdominal ganglion6 02 of 4 0.20Down
Salivary gland3 10 of 4 0.12Down
Crop5 11 of 4 0.20Down
Midgut4 10 of 4 0.20Down
Tubule5 00 of 4 0.20Down
Hindgut16 14 of 4 0.60Down
Heart270 54 of 410.13Up
Fat body811 384 of 430.36Up
Ovary1 00 of 4 0.00Down
Testis1 00 of 4 0.00Down
Male accessory glands1 10 of 4 0.10Down
Virgin spermatheca347 104 of 413.01Up
Mated spermatheca332 154 of 412.44Up
Adult carcass187 104 of 4 7.00Up
Larval CNS1 01 of 4 0.07Down
Larval Salivary gland21 14 of 4 0.80None
Larval midgut5 01 of 4 0.20Down
Larval tubule5 11 of 4 0.20Down
Larval hindgut17 34 of 4 0.64None
Larval fat body2455 2254 of 491.90Up
Larval trachea9 64 of 4 0.37Down
Larval carcass8 23 of 4 0.30Down
S2 cells (growing)5 03 of 4 0.22Down
Whole fly26 34 of 4

Looking for CG9616-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime