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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG9623-RB through 18771 annotations produced 1 hits



alphaPS2 integrin (if):

Annotation Number : CG9623
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001250
Gbrowse : chrX:16646221-16677467 (-) // 100.0 //
Probeset : 1632744_a_at
Accessions : protein= NP_001162777; /// NP_001162778; /// NP_523378; /// NP_728021;, nucleotide= NM_001169306; /// NM_001169307; /// NM_078654; /// NM_167544;
Pathway : open tracheal system // traceable author statement /// 0007427 // epithelial cell migration
Interpro : open tracheal system // traceable author statement /// 0007431 // salivary gland development // traceable author statem
FlyMine data for FBgn0001250.
Homophila reports that CG9623 is a close match (9e-32) to human gene CD11B;CR3A;ITGAM;MAC1A;SLEB6 (NP_000623), a gene associated with {Systemic lupus erythematous, association with susceptibility to, 6}, 609939 (3).
BioGrid reports that CG9623 interacts with CG3954 CG1765 CG15793 CG2746 CG3411 CG3411 CG14938 CG10293 CG1771 CG1771 CG1771 CG1771 CG1771 CG1771 CG1771 CG1771 CG1771 CG1771 CG1771 CG1771 CG1771 CG1771 CG1771 CG1771 CG7935 CG1560 CG1560 CG1560 CG1560 CG1560 CG1560 CG1560 CG1560 CG1560 CG1560 CG2845 CG4444 CG8355 .
TRiP has 2 RNAi stocks for FBgn0001250 available for purchase.
VDRC has 3 RNAi stocks for FBgn0001250 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain78 34 of 4 0.60Down
Head204 54 of 4 1.60Up
Eye68 44 of 4 0.53Down
Thoracicoabdominal ganglion117 64 of 4 0.90None
Salivary gland183 84 of 4 1.42Up
Crop925 444 of 4 7.10Up
Midgut87 134 of 4 0.70Down
Tubule300 134 of 4 2.30Up
Hindgut579 94 of 4 4.50Up
Heart255 244 of 4 1.97Up
Fat body160 184 of 4 1.24None
Ovary21 24 of 4 0.20Down
Testis34 14 of 4 0.30Down
Male accessory glands96 124 of 4 0.70None
Virgin spermatheca234 244 of 4 1.81Up
Mated spermatheca193 134 of 4 1.49Up
Adult carcass280 64 of 4 2.20Up
Larval CNS145 124 of 4 1.12None
Larval Salivary gland493 204 of 4 3.80Up
Larval midgut85 74 of 4 0.66Down
Larval tubule1185 394 of 4 9.10Up
Larval hindgut554 194 of 4 4.28Up
Larval fat body23 32 of 4 0.20Down
Larval trachea349 144 of 4 2.70Up
Larval carcass991 954 of 4 7.65Up
S2 cells (growing)6 01 of 4 0.05Down
Whole fly129 94 of 4

Looking for CG9623-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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